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[172660_s_at]

Description Y38E10A.24 /REP_DB=WormBase Gene ID /WP=CE21605 /TR=Q9NAI7 /GB=CAB54416.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 56      6grp_total > 42      4grp_total > 57      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1101
1 2 3 4 range
A 1602.4
(-2)
P 		2395.6
(3)
P 		2358.5
(2.8)
P 		1444.5
(-3)
P 		951
B 1663.2
(-1.6)
P 		1801.7
(-0.8)
P 		2439.3
(3)
P 		1437.1
(-3)
P 		1002
C 1493
(-2.1)
P 		1977.1
(0.7)
P 		2370.7
(3)
P 		1338.3
(-3)
P 		1032
avr 1586.2
(-1.9) 		2058.1
(1) 		2389.5
(3) 		1406.6
(-3) 		983

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1715
1 2 3 4 5 6 range
A 1758.1
(-1.1)
P 		1836.6
(-0.7)
P 		2541.3
(3)
P 		2136.4
(0.9)
P 		1694.3
(-1.5)
P 		1405.6
(-3)
P 		1136
B 2036.6
(-1.5)
P 		2328
(-0.3)
P 		3120.4
(3)
P 		1981
(-1.7)
P 		2099.5
(-1.2)
P 		1675.5
(-3)
P 		1445
C 2244.7
(3)
P 		2189.5
(2.4)
P 		2078.8
(1.2)
P 		1699.2
(-3)
P 		2232.7
(2.9)
P 		1754
(-2.4)
P 		546
avr 2013.1
(-0.5) 		2118
(0.1) 		2580.2
(3) 		1938.9
(-1) 		2008.8
(-0.5) 		1611.7
(-3) 		969
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 615
1 2 3 4 range
A 583.4
(2.5)
P 		520
(1.6)
P 		616.5
(3)
P 		211.4
(-3)
P 		405
B 530.4
(2.2)
P 		445
(0.2)
P 		565.2
(3)
P 		306.3
(-3)
P 		259
C 494.2
(-0.3)
P 		568.4
(0.4)
P 		826.3
(3)
P 		225.7
(-3)
P 		601
avr 536
(1.1) 		511.1
(0.7) 		669.3
(3) 		247.8
(-3) 		422

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 324.1
(-3)
P 		653.2
(3)
P 		553.4
(1.2)
P 		541.9
(1)
P 		511.3
(0.4)
P 		342.2
(-2.7)
P 		329
B 708.6
(0.4)
P 		774.9
(1.6)
P 		757.7
(1.3)
P 		524.7
(-3)
P 		853
(3)
P 		624.8
(-1.2)
P 		328
C 832
(3)
P 		668.1
(1)
P 		529.1
(-0.7)
P 		341.7
(-3)
P 		722.5
(1.7)
P 		587.2
(0)
P 		490
avr 621.6
(1) 		698.7
(3) 		613.4
(0.8) 		469.4
(-3) 		695.6
(2.9) 		518.1
(-1.7) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172660_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2883
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.24 NCBI
Target Description Y38E10A.24 /REP_DB=WormBase Gene ID /WP=CE21605 /TR=Q9NAI7 /GB=CAB54416.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064306 NCBI Caenorhabditis elegans Y38E10A.24 (Y38E10A.24) mRNA, complete cds. 11/11 None
SNAP00000017451 ENSEMBL cdna:SNAP chromosome:CEL140:II:12678933:12679225:1 11/11 None
GENEFINDER00000017453 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12678933:12679225:1 11/11 None
Y38E10A.24.2 ENSEMBL cdna:known chromosome:CEL140:II:12678932:12679677:1 gene:Y38E10A.24 11/11 None
Y38E10A.24.1 ENSEMBL cdna:known chromosome:CEL140:II:12678932:12679678:1 gene:Y38E10A.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12678929-12679222(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.24
Entrez Gene 174898 Entrez gene
SwissProt Q9NAI7 EMBL-EBI
WormBase CE21605 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54416 Hypothetical protein Y38E10A.24 [Caenorhabditis elegans] ref|NP_496707.1| Y38E10A.24 [Caenorhabditis elegans] 7.0E-36
blast CAE63453 Hypothetical protein CBG07913 [Caenorhabditis briggsae] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:172660_S_AT
ccgccacatatttcctcaagaacgctttttgggacaaaagaggcctttggactgccacgt
tggccgtcgcctatttcgcccgctgctgggagagcgccggatacaataaggccgagatga
tgaagggtcactcaaaaatgtacgcggatcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCACATATTTCCTCAAGAACGC 566 261 26 Antisense
TATTTCCTCAAGAACGCTTTTTGGG 328 661 34 Antisense
TCCTCAAGAACGCTTTTTGGGACAA 532 253 38 Antisense
GGACAAAAGAGGCCTTTGGACTGCC 372 525 57 Antisense
AAAAGAGGCCTTTGGACTGCCACGT 438 121 61 Antisense
CTGCTGGGAGAGCGCCGGATACAAT 459 235 108 Antisense
GAGCGCCGGATACAATAAGGCCGAG 73 385 117 Antisense
GGATACAATAAGGCCGAGATGATGA 385 511 124 Antisense
CCGAGATGATGAAGGGTCACTCAAA 249 263 137 Antisense
GGGTCACTCAAAAATGTACGCGGAT 385 497 150 Antisense
CACTCAAAAATGTACGCGGATCGAC 451 195 154 Antisense
Sequence Source Affymetrix Proprietary Database