[Home] | [Total List]

[172659_x_at]

Description T23F2.5 /REP_DB=WormBase Gene ID /WP=CE05000 /TR=SW:Q22702 /GB=AAA80387.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 32      6grp_total > 24      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1481
1 2 3 4 range
A 918.1
(-0.6)
P 		1199.8
(0.5)
P 		1814.3
(3)
P 		333.7
(-3)
P 		1481
B 1199
(2.5)
P 		1133.1
(2.1)
P 		1270.4
(3)
P 		386.6
(-3)
P 		884
C 780.1
(-1)
P 		1540.5
(3)
P 		1334.9
(1.9)
P 		388.3
(-3)
P 		1152
avr 965.7
(0.2) 		1291.1
(2) 		1473.2
(3) 		369.5
(-3) 		1104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 747
1 2 3 4 5 6 range
A 1142.5
(-0.5)
P 		1580.6
(3)
P 		1406.8
(1.6)
P 		1150
(-0.5)
P 		833.9
(-3)
P 		842.6
(-2.9)
P 		747
B 1395.1
(2.5)
P 		1303.8
(1.3)
P 		1430.6
(3)
P 		1049.4
(-2.2)
P 		1144.1
(-0.9)
P 		989.9
(-3)
P 		441
C 1465.2
(3)
P 		1329.9
(1.7)
P 		951.9
(-2)
P 		846.2
(-3)
P 		1095.3
(-0.6)
P 		947.9
(-2)
P 		619
avr 1334.3
(2.1) 		1404.8
(3) 		1263.1
(1.2) 		1015.2
(-1.9) 		1024.4
(-1.8) 		926.8
(-3) 		478
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 334.3
(1)
P 		260.4
(-0)
P 		474.3
(3)
P 		48.8
(-3)
P 		426
B 382.4
(3)
P 		279.9
(1)
P 		294.4
(1.2)
P 		82.4
(-3)
P 		300
C 258.2
(-0.1)
P 		442.9
(2.7)
P 		465.3
(3)
P 		65.5
(-3)
P 		400
avr 325
(1.5) 		327.7
(1.5) 		411.3
(3) 		65.6
(-3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 210.6
(-2.9)
P 		562.1
(3)
P 		306.4
(-1.3)
P 		291.7
(-1.5)
P 		251.6
(-2.2)
P 		205.2
(-3)
P 		357
B 485.4
(3)
P 		434
(1.5)
P 		347.4
(-1)
P 		278
(-3)
P 		464.9
(2.4)
P 		369.1
(-0.4)
P 		207
C 543.1
(3)
P 		405.8
(0.8)
P 		242.3
(-1.8)
P 		170.2
(-3)
P 		354.4
(-0)
P 		317.3
(-0.6)
P 		373
avr 413
(1.5) 		467.3
(3) 		298.7
(-1.6) 		246.6
(-3) 		357
(0) 		297.2
(-1.6) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172659_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17199
Sequence Type Exemplar sequence
Representative Public ID T23F2.5 NCBI
Target Description T23F2.5 /REP_DB=WormBase Gene ID /WP=CE05000 /TR=SW:Q22702 /GB=AAA80387.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076535 NCBI Caenorhabditis elegans T23F2.5 (T23F2.5) mRNA, complete cds. 11/11 None
SNAP00000015218 ENSEMBL cdna:SNAP chromosome:CEL140:X:5516878:5517101:-1 11/11 None
GENEFINDER00000015222 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5516878:5517121:-1 11/11 None
T23F2.5 ENSEMBL cdna:known chromosome:CEL140:X:5516671:5517117:-1 gene:T23F2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5516877-5517101(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F2.5
Entrez Gene 180823 Entrez gene
SwissProt Q22702 EMBL-EBI
WormBase CE05000 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80387 Hypothetical protein T23F2.5 [Caenorhabditis elegans] ref|NP_508936.1| T23F2.5 [Caenorhabditis elegans] sp|Q22702|YCU5_CAEEL Hypothetical UPF0057 protein T23F2.5 in chromosome X 1.0E-27
blast CAE68837 Hypothetical protein CBG14798 [Caenorhabditis briggsae] emb|CAE68762.1| Hypothetical protein CBG14697 [Caenorhabditis briggsae] 2.0E-27
blast AAA80385 Hypothetical protein T23F2.3 [Caenorhabditis elegans] ref|NP_508934.1| T23F2.3 [Caenorhabditis elegans] sp|Q22700|YCU3_CAEEL Hypothetical UPF0057 protein T23F2.3 in chromosome X 2.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 7.4E-27
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 7.4E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508936.1 1 34-56
T23F2.5 1 34-56
SNAP00000015218 1 34-56
GENEFINDER00000015222 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:172659_X_AT
tcacttgcaccgacattccaaagttcctctgcgctctgcttcttccaccaatcggagtct
ggctcgagaagggatgcacttaccacttggccatcaacattcttctcaccatcctcggat
atattcccggaatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTTGCACCGACATTCCAAAGTT 526 627 20 Antisense
TTGCACCGACATTCCAAAGTTCCTC 510 703 24 Antisense
TTCTTCCACCAATCGGAGTCTGGCT 460 689 59 Antisense
TTCCACCAATCGGAGTCTGGCTCGA 610 699 62 Antisense
CACCAATCGGAGTCTGGCTCGAGAA 363 201 65 Antisense
GAGTCTGGCTCGAGAAGGGATGCAC 266 401 74 Antisense
AGAAGGGATGCACTTACCACTTGGC 250 75 86 Antisense
ACTTACCACTTGGCCATCAACATTC 299 103 97 Antisense
CTTCTCACCATCCTCGGATATATTC 327 221 121 Antisense
CACCATCCTCGGATATATTCCCGGA 688 199 126 Antisense
TCCTCGGATATATTCCCGGAATCAT 221 591 131 Antisense
Sequence Source Affymetrix Proprietary Database