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[172658_x_at]

Description C03B8.1 /REP_DB=WormBase Gene ID /WP=CE00765 /TR=SW:Q11104 /GB=AAA50668.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 28      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 11.2
(-3)
A 		24
(-0.8)
A 		12.5
(-2.8)
A 		45.4
(3)
A 		34
B 46.1
(3)
A 		32.9
(1.1)
A 		5
(-3)
A 		6
(-2.9)
A 		41
C 43.4
(-0.1)
A 		32.9
(-1.1)
A 		12.5
(-3)
A 		75.7
(3)
A 		63
avr 33.6
(1.4) 		29.9
(0.7) 		10
(-3) 		42.4
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 64.3
(1.5)
A 		28
(-3)
A 		51.4
(-0.1)
A 		62.5
(1.3)
A 		76.1
(3)
A 		71.4
(2.4)
A 		48
B 64.4
(-1.6)
A 		44.3
(-3)
A 		52.6
(-2.4)
A 		56.7
(-2.1)
A 		80.5
(-0.4)
A 		127.6
(3)
A 		83
C 49.5
(-1.2)
A 		67
(-0.2)
A 		88
(1.1)
A 		19.1
(-3)
A 		105.6
(2.1)
A 		120.8
(3)
A 		102
avr 59.4
(-1.7) 		46.4
(-3) 		64
(-1.2) 		46.1
(-3) 		87.4
(1.1) 		106.6
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.1
(-1.6)
A 		5.2
(0.4)
A 		3.3
(-3)
A 		6.7
(3)
A 		3
B 14.7
(3)
A 		8.1
(0.1)
A 		1.2
(-3)
A 		1.3
(-3)
A 		14
C 14.4
(3)
A 		9.4
(0)
A 		4.4
(-3)
A 		12.8
(2)
A 		10
avr 11.1
(3) 		7.6
(0.4) 		3
(-3) 		6.9
(-0.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 11.9
(-2.1)
A 		10
(-3)
A 		11.2
(-2.4)
A 		15.8
(-0.3)
A 		23
(3)
A 		17.4
(0.4)
A 		13
B 22.4
(-1.3)
A 		14.7
(-2.7)
A 		12.8
(-3)
A 		15
(-2.6)
A 		32.7
(0.4)
A 		47.6
(3)
A 		35
C 18.4
(-0.6)
A 		20.4
(-0.3)
A 		22.4
(0)
A 		3.8
(-3)
A 		34.2
(2)
A 		40.4
(3)
A 		37
avr 17.6
(-1.4) 		15
(-2.1) 		15.5
(-2) 		11.5
(-3) 		30
(1.7) 		35.1
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172658_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7028
Sequence Type Exemplar sequence
Representative Public ID C03B8.1 NCBI
Target Description C03B8.1 /REP_DB=WormBase Gene ID /WP=CE00765 /TR=SW:Q11104 /GB=AAA50668.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066280 NCBI Caenorhabditis elegans C03B8.1 (C03B8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000029926 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7716690:7719739:1 11/11 None
SNAP00000029923 ENSEMBL cdna:SNAP chromosome:CEL140:III:7716696:7717223:1 11/11 None
C03B8.1 ENSEMBL cdna:known chromosome:CEL140:III:7716690:7716999:1 gene:C03B8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7716687-7716997(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B8.1
Entrez Gene 182153 Entrez gene
SwissProt Q11104 EMBL-EBI
WormBase CE00765 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50668 Hypothetical protein C03B8.1 [Caenorhabditis elegans] ref|NP_498681.1| C03B8.1 [Caenorhabditis elegans] sp|Q11104|YPB1_CAEEL Hypothetical protein B03B8.1 in chromosome III 1.0E-28
blast AAA50668 Hypothetical protein C03B8.1 [Caenorhabditis elegans] ref|NP_498681.1| C03B8.1 [Caenorhabditis elegans] sp|Q11104|YPB1_CAEEL Hypothetical protein B03B8.1 in chromosome III 5.0E-23
blast AAA50668 Hypothetical protein C03B8.1 [Caenorhabditis elegans] ref|NP_498681.1| C03B8.1 [Caenorhabditis elegans] sp|Q11104|YPB1_CAEEL Hypothetical protein B03B8.1 in chromosome III 3.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000029923 1 48-70
Sequence
Target Sequence 
>C. ELEGANS:172658_X_AT
cctctgcagctgttgccaacatcatctgcaacctgttcctccaactgcctgctgacagaa
ttaatgatgttcttgggttcaaaaagccagtactttctgtagatcaaatgaatattcccg
aatatcaatacgctgcgtttggagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTGCAGCTGTTGCCAACATCAT 440 267 26 Antisense
TGCCAACATCATCTGCAACCTGTTC 56 587 39 Antisense
CTCCAACTGCCTGCTGACAGAATTA 125 237 64 Antisense
AACTGCCTGCTGACAGAATTAATGA 627 141 68 Antisense
GAATTAATGATGTTCTTGGGTTCAA 339 323 83 Antisense
GATGTTCTTGGGTTCAAAAAGCCAG 298 407 91 Antisense
GGGTTCAAAAAGCCAGTACTTTCTG 483 395 100 Antisense
AGCCAGTACTTTCTGTAGATCAAAT 557 83 110 Antisense
GTAGATCAAATGAATATTCCCGAAT 432 455 124 Antisense
ATTCCCGAATATCAATACGCTGCGT 425 9 139 Antisense
ATATCAATACGCTGCGTTTGGAGCC 685 19 147 Antisense
Sequence Source Affymetrix Proprietary Database