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[172657_x_at]

Description C03B8.2 /REP_DB=WormBase Gene ID /WP=CE00764 /TR=SW:Q11105 /GB=AAA50669.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_high_8_8 > 07      6grp_highest_nonorm > 90      6grp_total > 79      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 42.1
(-1.4)
M 		39.5
(-1.6)
A 		22.3
(-3)
A 		97.3
(3)
P 		75
B 52.5
(-3)
P 		53.9
(-2.8)
A 		54.5
(-2.8)
P 		105.5
(3)
P 		53
C 82.4
(2)
P 		50.7
(-3)
P 		70.5
(0.1)
P 		89.1
(3)
P 		38
avr 59
(-1.7) 		48
(-3) 		49.1
(-2.9) 		97.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 72.8
(-1.1)
P 		79.7
(0.1)
P 		95.7
(3)
P 		70.5
(-1.6)
P 		62.5
(-3)
P 		69.7
(-1.7)
P 		33
B 80.2
(-0.6)
P 		40.4
(-3)
P 		49.3
(-2.5)
P 		59.3
(-1.9)
P 		124.5
(2.1)
P 		139.2
(3)
P 		99
C 87.6
(-1.4)
P 		82.9
(-1.9)
P 		73.2
(-2.9)
P 		72.7
(-3)
P 		89.9
(-1.2)
P 		128.5
(3)
P 		56
avr 80.2
(-1.3) 		67.7
(-3) 		72.7
(-2.3) 		67.5
(-3) 		92.3
(0.3) 		112.5
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 15.3
(3)
M 		8.6
(-1.2)
A 		5.8
(-3)
A 		14.2
(2.3)
P 		10
B 16.7
(-0.5)
P 		13.3
(-2.6)
A 		12.6
(-3)
P 		22.5
(3)
P 		10
C 27.3
(3)
P 		14.6
(-3)
P 		24.6
(1.7)
P 		15
(-2.8)
P 		13
avr 19.8
(3) 		12.2
(-3) 		14.3
(-1.3) 		17.2
(0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 13.4
(-3)
P 		28.3
(3)
P 		20.8
(-0)
P 		17.9
(-1.2)
P 		18.9
(-0.8)
P 		17
(-1.6)
P 		15
B 27.9
(-0.6)
P 		13.4
(-2.8)
P 		12
(-3)
P 		15.7
(-2.4)
P 		50.6
(2.8)
P 		51.9
(3)
P 		40
C 32.5
(0.8)
P 		25.3
(-0.7)
P 		18.6
(-2.2)
P 		14.6
(-3)
P 		29.1
(0.1)
P 		43
(3)
P 		28
avr 24.6
(-0.6) 		22.3
(-1.2) 		17.1
(-2.7) 		16.1
(-3) 		32.9
(1.8) 		37.3
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172657_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6928
Sequence Type Exemplar sequence
Representative Public ID C03B8.2 NCBI
Target Description C03B8.2 /REP_DB=WormBase Gene ID /WP=CE00764 /TR=SW:Q11105 /GB=AAA50669.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066279 NCBI Caenorhabditis elegans C03B8.2 (C03B8.2) mRNA, complete cds. 11/11 None
C03B8.2 ENSEMBL cdna:known chromosome:CEL140:III:7716089:7716369:1 gene:C03B8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067937 6/11 Cross Hyb Matching Probes A 
NM_064731 4/11 Cross Hyb Matching Probes A 
NM_078190 3/11 Cross Hyb Matching Probes A 
NM_073820 2/11 Cross Hyb Matching Probes A 
NM_071600 2/11 Cross Hyb Matching Probes A 
NM_077024 1/11 Cross Hyb Matching Probes A 
SNAP00000008674 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019308 1/11 Cross Hyb Matching Probes None
SNAP00000019301 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029924 8/11 Cross Hyb Matching Probes None
SNAP00000029922 8/11 Cross Hyb Matching Probes None
SNAP00000005919 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005928 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017793 4/11 Cross Hyb Matching Probes None
SNAP00000017785 4/11 Cross Hyb Matching Probes None
SNAP00000029927 3/11 Cross Hyb Matching Probes None
SNAP00000014612 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014619 2/11 Cross Hyb Matching Probes None
SNAP00000016557 2/11 Cross Hyb Matching Probes None
GENEFINDER00000020019 1/11 Cross Hyb Matching Probes None
SNAP00000012383 1/11 Cross Hyb Matching Probes None
SNAP00000010126 1/11 Cross Hyb Matching Probes None
GENEFINDER00000010128 2/11 Cross Hyb Matching Probes None
F27D4.3 3/11 Cross Hyb Matching Probes None
W02A11.6 1/11 Cross Hyb Matching Probes None
ZK1225.7 2/11 Cross Hyb Matching Probes None
W05G11.2 4/11 Cross Hyb Matching Probes A 
C04C3.4 6/11 Cross Hyb Matching Probes A 
T24A6.1 2/11 Cross Hyb Matching Probes A 
W02F12.1 3/11 Cross Hyb Matching Probes None
T07F10.5 2/11 Cross Hyb Matching Probes A 
F08F1.9 1/11 Cross Hyb Matching Probes A 
ZK678.3 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7716086-7716367(+) 100.0 100.0
chrIII:58456-58724(+) 95.56 95.56
chrIV:3394368-3394648(+) 96.67 96.67
chrV:12868866-12869138(+) 95.0 95.0
chrV:3559270-3559539(+) 90.56 90.56
chrX:8148364-8148640(+) 87.22 93.33
chrI:12762860-12763141(+) 93.89 93.89
chrX:8409695-8409974(-) 96.67 96.67
chrX:15748400-15748679(-) 95.0 95.0
chrX:4239609-4239889(-) 93.89 93.89
chrII:2018856-2019135(-) 96.11 96.11
Public Domain and Genome References
Gene Title
Ensembl C03B8.2
Entrez Gene 182154 Entrez gene
SwissProt Q11105 EMBL-EBI
WormBase CE00764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50669 Hypothetical protein C03B8.2 [Caenorhabditis elegans] ref|NP_498680.1| C03B8.2 [Caenorhabditis elegans] sp|Q11105|YPB2_CAEEL Hypothetical protein B03B8.2 in chromosome III 3.0E-28
blast AAB92025 Hypothetical protein C04C3.4 [Caenorhabditis elegans] ref|NP_500338.1| C04C3.4 [Caenorhabditis elegans] 1.0E-24
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:172657_X_AT
tgcggaatgctgtcaaactcctcgaactgtcgctgatagatgatcattttctacgttacc
gcccatctgatgctgctcagaatcacagaatcaacaattcgaccaaatttattttttcat
ttttcatgttcaataaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGAATGCTGTCAAACTCCTCGA 219 581 14 Antisense
AACTCCTCGAACTGTCGCTGATAGA 648 139 29 Antisense
CTCGAACTGTCGCTGATAGATGATC 655 231 34 Antisense
GAACTGTCGCTGATAGATGATCATT 396 349 37 Antisense
GATGATCATTTTCTACGTTACCGCC 337 409 52 Antisense
CGCCCATCTGATGCTGCTCAGAATC 663 255 73 Antisense
GATGCTGCTCAGAATCACAGAATCA 600 413 82 Antisense
GAATCACAGAATCAACAATTCGACC 490 327 93 Antisense
GAATCAACAATTCGACCAAATTTAT 255 327 101 Antisense
TTTATTTTTTCATTTTTCATGTTCA 239 675 121 Antisense
TTTTCATTTTTCATGTTCAATAAAC 131 677 127 Antisense
Sequence Source Affymetrix Proprietary Database