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[172656_x_at]

Description Y71F9B.13B /REP_DB=WormBase Gene ID /WP=CE25567 /TR=Q9N4G0 /GB=AAF36025.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_highest_nonorm > 34      6grp_total > 31      4grp_total > 19      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1139
1 2 3 4 range
A 1955.7
(-2.4)
P 		2617.8
(1.5)
P 		1859.5
(-3)
P 		2867.3
(3)
P 		1008
B 1892.4
(-3)
P 		2259.6
(1.2)
P 		1987.4
(-1.9)
P 		2418.2
(3)
P 		526
C 2249.4
(0.3)
P 		2096.1
(-0.7)
P 		1728.3
(-3)
P 		2687.8
(3)
P 		960
avr 2032.5
(-1.7) 		2324.5
(0.5) 		1858.4
(-3) 		2657.8
(3) 		799

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2043
1 2 3 4 5 6 range
A 2234.2
(-0.7)
P 		2773.9
(1)
P 		3361.7
(3)
P 		2322.4
(-0.5)
P 		1643.9
(-2.7)
P 		1555.5
(-3)
P 		1806
B 2477
(-0.5)
P 		2867.3
(0.8)
P 		3569.5
(3)
P 		2699.4
(0.3)
P 		1967.2
(-2.1)
P 		1670.8
(-3)
P 		1899
C 2421.5
(1.4)
P 		2649
(2.5)
P 		2750.2
(3)
P 		2384.8
(1.2)
P 		1890.1
(-1.2)
P 		1526.7
(-3)
P 		1224
avr 2377.6
(-0.1) 		2763.4
(1.3) 		3227.1
(3) 		2468.9
(0.2) 		1833.7
(-2.1) 		1584.3
(-3) 		1643
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 712.1
(3)
P 		568.3
(0)
P 		486.1
(-1.6)
P 		419.7
(-3)
P 		292
B 603.5
(3)
P 		558.1
(1.1)
P 		460.5
(-3)
P 		515.3
(-0.7)
P 		143
C 744.6
(3)
P 		602.6
(0.1)
P 		602.4
(0.1)
P 		453.2
(-3)
P 		291
avr 686.7
(3) 		576.3
(0) 		516.3
(-1.6) 		462.7
(-3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 411.9
(-2.7)
P 		986.5
(3)
P 		732.1
(0.5)
P 		589
(-0.9)
P 		496
(-1.8)
P 		378.7
(-3)
P 		608
B 861.9
(1.3)
P 		954.4
(3)
P 		866.8
(1.4)
P 		715
(-1.3)
P 		799.2
(0.2)
P 		623
(-3)
P 		331
C 897.6
(3)
P 		808.3
(1.7)
P 		700
(0.2)
P 		479.6
(-3)
P 		611.6
(-1.1)
P 		511.1
(-2.5)
P 		418
avr 723.8
(0.2) 		916.4
(3) 		766.3
(0.8) 		594.5
(-1.7) 		635.6
(-1.1) 		504.3
(-3) 		412
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172656_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.225
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.13B NCBI
Target Description Y71F9B.13B /REP_DB=WormBase Gene ID /WP=CE25567 /TR=Q9N4G0 /GB=AAF36025.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058640(11), NM_182045(10), NM_058639(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058640 NCBI Caenorhabditis elegans Y71F9B.13b (Y71F9B.13) mRNA, complete cds. 11/11 A 
NM_182045 NCBI Caenorhabditis elegans Y71F9B.13c (Y71F9B.13) mRNA, complete cds. 10/11 None
NM_058639 NCBI Caenorhabditis elegans Y71F9B.13a (Y71F9B.13) mRNA, complete cds. 10/11 A 
GENEFINDER00000013343 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2776434:2778718:-1 10/11 None
Y71F9B.13c.2 ENSEMBL cdna:known chromosome:CEL140:I:2775908:2777450:-1 gene:Y71F9B.13 10/11 A 
Y71F9B.13b ENSEMBL cdna:known chromosome:CEL140:I:2776413:2777932:-1 gene:Y71F9B.13 11/11 A 
Y71F9B.13c.1 ENSEMBL cdna:known chromosome:CEL140:I:2776434:2778697:-1 gene:Y71F9B.13 10/11 A 
Y71F9B.13a ENSEMBL cdna:known chromosome:CEL140:I:2776434:2778649:-1 gene:Y71F9B.13 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013312 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2776433-2777932(-) 95.85 100.0
Public Domain and Genome References
Ensembl Y71F9B.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE60504 Hypothetical protein CBG04123 [Caenorhabditis briggsae] 1.0E-121
blast AAF36024 Hypothetical protein Y71F9B.13a [Caenorhabditis elegans] ref|NP_491040.1| Y71F9B.13a [Caenorhabditis elegans] 1.0E-118
blast CAE60504 Hypothetical protein CBG04123 [Caenorhabditis briggsae] 1.0E-113
blast AAF36025 Hypothetical protein Y71F9B.13b [Caenorhabditis elegans] ref|NP_491041.1| Y71F9B.13b [Caenorhabditis elegans] 2.0E-99
blast AAF36024 Hypothetical protein Y71F9B.13a [Caenorhabditis elegans] ref|NP_491040.1| Y71F9B.13a [Caenorhabditis elegans] 5.0E-91
Sequence
Target Sequence 
>C. ELEGANS:172656_X_AT
agacaactctctgcggctttgtaatattattcgtcgcggactgcaatttcagcggcggag
gccccgggccgggaaaactggcggacaccaccaaccgccaggtcgcggacacattctacc
agaggacctacgaaaactcgccgagagtcctgccaaagtatatctactataatgagaata
ccgccagagactacgggcagttcggtaactggtactacccgaattactatccaccaactt
atctcggattcttcgacggacggccggcaagtatggcacagcttgagaatgattataaat
ttgcaaaaggtggacattatccatataacagagccgataatattgtgaacattgggcttc
aacagacatatcttccaacttgccttcacgacttgttctactgtgttcgcgccagcaatg
ggcagagaccccaggcgtatttgaactacaaagaataccgccgtgaccgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACAACTCTCTGCGGCTTTGTAAT 435 71 32 Antisense
GTCGCGGACTGCAATTTCAGCGGCG 519 475 64 Antisense
GACACATTCTACCAGAGGACCTACG 687 365 139 Antisense
TCGCCGAGAGTCCTGCCAAAGTATA 372 597 169 Antisense
GAATTACTATCCACCAACTTATCTC 251 325 252 Antisense
TATCTCGGATTCTTCGACGGACGGC 157 655 271 Antisense
GGACGGCCGGCAAGTATGGCACAGC 52 525 289 Antisense
ACAGACATATCTTCCAACTTGCCTT 150 109 393 Antisense
ACGACTTGTTCTACTGTGTTCGCGC 4 93 419 Antisense
GCAGAGACCCCAGGCGTATTTGAAC 614 311 453 Antisense
ACAAAGAATACCGCCGTGACCGTGA 280 111 479 Antisense
Sequence Source Affymetrix Proprietary Database