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[172655_x_at]

Description F47B7.1 /REP_DB=WormBase Gene ID /WP=CE02743 /TR=SW:Q20516 /GB=AAA80373.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 01      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 04      6grp_total > 33      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4476
1 2 3 4 range
A 3939.9
(1.3)
P 		5181.3
(3)
P 		3685.1
(0.9)
P 		811.8
(-3)
P 		4370
B 3651.7
(1.2)
P 		4876.2
(3)
P 		4578.1
(2.6)
P 		705
(-3)
P 		4171
C 4022.9
(1.9)
P 		4775.8
(3)
P 		4418.5
(2.5)
P 		752.7
(-3)
P 		4023
avr 3871.5
(1.5) 		4944.4
(3) 		4227.2
(2) 		756.5
(-3) 		4188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3960
1 2 3 4 5 6 range
A 5799.7
(2.4)
P 		3736.7
(-1)
P 		6135.3
(3)
P 		4188.7
(-0.2)
P 		4352.9
(0)
P 		2523.1
(-3)
P 		3612
B 5860.3
(1.7)
P 		5044.6
(-0.1)
P 		6482.9
(3)
P 		5084.6
(-0)
P 		4902.8
(-0.4)
P 		3714.5
(-3)
P 		2768
C 5720.3
(3)
P 		5205.8
(1.5)
P 		3712.9
(-3)
P 		4663.5
(-0.2)
P 		4445.2
(-0.8)
P 		3864
(-2.5)
P 		2007
avr 5793.4
(3) 		4662.4
(0.2) 		5443.7
(2.1) 		4645.6
(0.2) 		4567
(-0) 		3367.2
(-3) 		2426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1421
1 2 3 4 range
A 1434.5
(3)
P 		1124.7
(1.6)
P 		963.4
(0.9)
P 		118.8
(-3)
P 		1316
B 1164.5
(2.8)
P 		1204.3
(3)
P 		1060.8
(2.2)
P 		150.2
(-3)
P 		1054
C 1331.7
(2.1)
P 		1373.1
(2.3)
P 		1540
(3)
P 		126.9
(-3)
P 		1413
avr 1310.2
(3) 		1234
(2.6) 		1188.1
(2.4) 		132
(-3) 		1178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1506
1 2 3 4 5 6 range
A 1069.1
(0.8)
P 		1329
(2.9)
P 		1336.1
(3)
P 		1062.4
(0.7)
P 		1313.5
(2.8)
P 		614.3
(-3)
P 		722
B 2039.1
(3)
P 		1679.1
(-0.1)
P 		1574.2
(-1)
P 		1346.7
(-3)
P 		1991.9
(2.6)
P 		1385.1
(-2.7)
P 		692
C 2120.3
(3)
P 		1588.4
(0.3)
P 		945
(-3)
P 		937.8
(-3)
P 		1438.4
(-0.5)
P 		1293.5
(-1.2)
P 		1183
avr 1742.8
(3) 		1532.2
(1) 		1285.1
(-1.3) 		1115.6
(-2.8) 		1581.3
(1.5) 		1097.6
(-3) 		645
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172655_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18122
Sequence Type Exemplar sequence
Representative Public ID F47B7.1 NCBI
Target Description F47B7.1 /REP_DB=WormBase Gene ID /WP=CE02743 /TR=SW:Q20516 /GB=AAA80373.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076255 NCBI Caenorhabditis elegans F47B7.1 (F47B7.1) mRNA, complete cds. 11/11 None
SNAP00000025972 ENSEMBL cdna:SNAP chromosome:CEL140:X:3788016:3788274:1 11/11 None
GENEFINDER00000025976 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3788016:3788252:1 11/11 None
F47B7.1.1 ENSEMBL cdna:known chromosome:CEL140:X:3788003:3788516:1 gene:F47B7.1 11/11 None
F47B7.1.2 ENSEMBL cdna:known chromosome:CEL140:X:3788010:3788510:1 gene:F47B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3788016-3788275(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B7.1
Entrez Gene 180666 Entrez gene
SwissProt Q20516 EMBL-EBI
WormBase CE02743 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80373 Hypothetical protein F47B7.1 [Caenorhabditis elegans] ref|NP_508656.1| F47B7.1 [Caenorhabditis elegans] sp|Q20516|YV31_CAEEL Hypothetical UPF0057 protein F47B7.1 in chromosome X 3.0E-17
blast CAE68482 Hypothetical protein CBG14284 [Caenorhabditis briggsae] 2.0E-15
blast AAA80373 Hypothetical protein F47B7.1 [Caenorhabditis elegans] ref|NP_508656.1| F47B7.1 [Caenorhabditis elegans] sp|Q20516|YV31_CAEEL Hypothetical UPF0057 protein F47B7.1 in chromosome X 1.0E-11
blast CAE68482 Hypothetical protein CBG14284 [Caenorhabditis briggsae] 7.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 3.3E-29
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 2.4E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508656.1 2 7-24,34-56
F47B7.1.1 2 7-24,34-56
F47B7.1.2 2 7-24,34-56
SNAP00000025972 2 7-24,34-56
GENEFINDER00000025976 2 5-27,32-51
Sequence
Target Sequence 
>C. ELEGANS:172655_X_AT
atggccatcgaaatgcaacaaatcatcgagttgatccttgcgatcttccttccaccactc
gccatcttcatccacggaaacgactgcaacatgcacgtcgctgtgaacatcatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCATCGAAATGCAACAAATCA 584 51 13 Antisense
ACAAATCATCGAGTTGATCCTTGCG 565 111 30 Antisense
TCGAGTTGATCCTTGCGATCTTCCT 119 603 38 Antisense
CGCCATCTTCATCCACGGAAACGAC 542 257 72 Antisense
TTCATCCACGGAAACGACTGCAACA 274 685 79 Antisense
CCACGGAAACGACTGCAACATGCAC 20 275 84 Antisense
GAAACGACTGCAACATGCACGTCGC 637 357 89 Antisense
ACGACTGCAACATGCACGTCGCTGT 322 93 92 Antisense
ACTGCAACATGCACGTCGCTGTGAA 703 97 95 Antisense
GCAACATGCACGTCGCTGTGAACAT 600 319 98 Antisense
TGCACGTCGCTGTGAACATCATCCT 53 579 104 Antisense
Sequence Source Affymetrix Proprietary Database