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[172654_x_at]

Description Y71F9B.13A /REP_DB=WormBase Gene ID /WP=CE25566 /TR=Q9N4F9 /GB=AAF36024.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 24      6grp_total > 42      4grp_total > 18      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1547
1 2 3 4 range
A 2482.1
(-1.5)
P 		3310.3
(2.4)
P 		2160.5
(-3)
P 		3433.3
(3)
P 		1273
B 2426.7
(-3)
P 		3048
(-0.1)
P 		3003.9
(-0.3)
P 		3707
(3)
P 		1280
C 2884.8
(-0.2)
P 		2484.6
(-3)
P 		2514.3
(-2.8)
P 		3332.1
(3)
P 		848
avr 2597.9
(-2.8) 		2947.6
(-0.5) 		2559.6
(-3) 		3490.8
(3) 		931

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2229
1 2 3 4 5 6 range
A 2835.7
(-0.6)
P 		2881.6
(-0.5)
P 		3986.1
(3)
P 		2440.1
(-1.8)
P 		2498.9
(-1.7)
P 		2067.6
(-3)
P 		1919
B 2435.3
(-1.6)
P 		3097.2
(0.1)
P 		4159.5
(3)
P 		3096.3
(0.1)
P 		2378.4
(-1.8)
P 		1930.3
(-3)
P 		2229
C 2489.2
(-1.7)
P 		3328.2
(3)
P 		2957.3
(0.9)
P 		2740.9
(-0.3)
P 		2427.5
(-2.1)
P 		2267.6
(-3)
P 		1061
avr 2586.7
(-1.1) 		3102.3
(0.8) 		3701
(3) 		2759.1
(-0.5) 		2434.9
(-1.7) 		2088.5
(-3) 		1613
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 903.7
(3)
P 		718.6
(0.2)
P 		564.8
(-2.1)
P 		502.6
(-3)
P 		401
B 773.9
(2)
P 		752.8
(0.6)
P 		696.1
(-3)
P 		790
(3)
P 		94
C 954.9
(3)
P 		714.3
(-0.7)
P 		876.3
(1.8)
P 		561.9
(-3)
P 		393
avr 877.5
(3) 		728.6
(-0.4) 		712.4
(-0.8) 		618.2
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 522.7
(-2.8)
P 		1024.8
(3)
P 		868.1
(1.2)
P 		618.9
(-1.7)
P 		754
(-0.1)
P 		503.4
(-3)
P 		521
B 847.4
(-0.5)
P 		1030.9
(3)
P 		1010
(2.6)
P 		820.1
(-1.1)
P 		966.3
(1.8)
P 		719.8
(-3)
P 		311
C 922.6
(1.8)
P 		1015.5
(3)
P 		752.7
(-0.4)
P 		551.2
(-3)
P 		785.5
(0)
P 		759.1
(-0.3)
P 		464
avr 764.2
(-1.3) 		1023.7
(3) 		876.9
(0.6) 		663.4
(-3) 		835.3
(-0.1) 		660.8
(-3) 		363
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172654_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.244
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.13A NCBI
Target Description Y71F9B.13A /REP_DB=WormBase Gene ID /WP=CE25566 /TR=Q9N4F9 /GB=AAF36024.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058640(10), NM_182045(11), NM_058639(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058640 NCBI Caenorhabditis elegans Y71F9B.13b (Y71F9B.13) mRNA, complete cds. 10/11 A 
NM_182045 NCBI Caenorhabditis elegans Y71F9B.13c (Y71F9B.13) mRNA, complete cds. 11/11 None
NM_058639 NCBI Caenorhabditis elegans Y71F9B.13a (Y71F9B.13) mRNA, complete cds. 11/11 A 
GENEFINDER00000013343 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2776434:2778718:-1 11/11 None
Y71F9B.13c.2 ENSEMBL cdna:known chromosome:CEL140:I:2775908:2777450:-1 gene:Y71F9B.13 10/11 A 
Y71F9B.13b ENSEMBL cdna:known chromosome:CEL140:I:2776413:2777932:-1 gene:Y71F9B.13 10/11 A 
Y71F9B.13c.1 ENSEMBL cdna:known chromosome:CEL140:I:2776434:2778697:-1 gene:Y71F9B.13 11/11 A 
Y71F9B.13a ENSEMBL cdna:known chromosome:CEL140:I:2776434:2778649:-1 gene:Y71F9B.13 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013312 8/11 Cross Hyb Matching Probes None
SNAP00000013314 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2776433-2778649(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y71F9B.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE60504 Hypothetical protein CBG04123 [Caenorhabditis briggsae] 1.0E-121
blast AAF36024 Hypothetical protein Y71F9B.13a [Caenorhabditis elegans] ref|NP_491040.1| Y71F9B.13a [Caenorhabditis elegans] 1.0E-118
blast CAE60504 Hypothetical protein CBG04123 [Caenorhabditis briggsae] 1.0E-113
blast AAF36025 Hypothetical protein Y71F9B.13b [Caenorhabditis elegans] ref|NP_491041.1| Y71F9B.13b [Caenorhabditis elegans] 2.0E-99
blast AAF36024 Hypothetical protein Y71F9B.13a [Caenorhabditis elegans] ref|NP_491040.1| Y71F9B.13a [Caenorhabditis elegans] 5.0E-91
Sequence
Target Sequence 
>C. ELEGANS:172654_X_AT
cactgctctcgtggtccaagaacaattgtgacaaggttcagccaagaccaagggatatgt
catgtgaagatgttgtacagttcgtcgcggactgcaatttcagcggcggaggccccgggc
cgggaaaactggcggacaccaccaaccgccaggtcgcggacacattctaccagaggacct
acgaaaactcgccgagagtcctgccaaagtatatctactataatgagaataccgccagag
actacgggcagttcggtaactggtactacccgaattactatccaccaacttatctcggat
tcttcgacggacggccggcaagtatggcacagcttgagaatgattataaatttgcaaaag
gtggacattatccatataacagagccgataatattgtgaacattgggcttcaacagacat
atcttccaacttgccttcacgacttgttctactgtgttcgcgccagcaatgggcagagac
cccaggcgtatttgaactacaaagaataccgccgtgaccgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGCTCTCGTGGTCCAAGAACAA 75 197 65 Antisense
GTCGCGGACTGCAATTTCAGCGGCG 520 475 148 Antisense
GACACATTCTACCAGAGGACCTACG 688 365 223 Antisense
TCGCCGAGAGTCCTGCCAAAGTATA 373 597 253 Antisense
GAATTACTATCCACCAACTTATCTC 252 325 336 Antisense
TATCTCGGATTCTTCGACGGACGGC 156 655 355 Antisense
GGACGGCCGGCAAGTATGGCACAGC 53 525 373 Antisense
ACAGACATATCTTCCAACTTGCCTT 151 109 477 Antisense
ACGACTTGTTCTACTGTGTTCGCGC 5 93 503 Antisense
GCAGAGACCCCAGGCGTATTTGAAC 615 311 537 Antisense
ACAAAGAATACCGCCGTGACCGTGA 281 111 563 Antisense
Sequence Source Affymetrix Proprietary Database