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[172652_x_at]

Description C02B8.7 /REP_DB=WormBase Gene ID /WP=CE03896 /TR=SW:Q11097 /GB=AAA81440.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 56.7
(0.1)
A 		93.9
(3)
A 		16.7
(-3)
A 		56.8
(0.1)
A 		77
B 34.6
(-1)
A 		21.7
(-2.1)
A 		12.5
(-3)
A 		77.2
(3)
A 		65
C 95.5
(3)
A 		14.7
(-2.9)
A 		66.9
(0.9)
A 		13.7
(-3)
A 		82
avr 62.3
(3) 		43.4
(-0.7) 		32
(-3) 		49.2
(0.4) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 85.2
(3)
A 		63.3
(1.3)
A 		9.3
(-3)
A 		27.3
(-1.6)
A 		13.5
(-2.7)
A 		68.1
(1.6)
A 		76
B 84
(3)
A 		12.9
(-3)
A 		49.8
(0.1)
A 		55.5
(0.6)
A 		17.1
(-2.6)
A 		32.2
(-1.4)
A 		71
C 67.2
(1.7)
A 		11
(-3)
A 		31.7
(-1.3)
A 		34.8
(-1)
A 		59.3
(1)
A 		82.6
(3)
A 		72
avr 78.8
(3) 		29.1
(-3) 		30.3
(-2.9) 		39.2
(-1.8) 		30
(-2.9) 		61
(0.9) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 20.6
(3)
A 		20.4
(2.9)
A 		4.4
(-3)
A 		8.3
(-1.6)
A 		16
B 11
(0.6)
A 		5.4
(-1.9)
A 		2.9
(-3)
A 		16.5
(3)
A 		14
C 31.6
(3)
A 		4.2
(-2.6)
A 		23.3
(1.3)
A 		2.3
(-3)
A 		29
avr 21.1
(3) 		10
(-2.5) 		10.2
(-2.4) 		9
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.7
(1)
A 		22.5
(3)
A 		2
(-3)
A 		6.9
(-1.6)
A 		4.1
(-2.4)
A 		16.6
(1.3)
A 		21
B 29.2
(3)
A 		4.3
(-3)
A 		12.1
(-1.1)
A 		14.7
(-0.5)
A 		7
(-2.3)
A 		12
(-1.1)
A 		25
C 24.9
(2.3)
A 		3.4
(-3)
A 		8.1
(-1.8)
A 		7
(-2.1)
A 		19.2
(0.9)
A 		27.6
(3)
A 		24
avr 23.3
(3) 		10.1
(-2) 		7.4
(-3) 		9.5
(-2.2) 		10.1
(-2) 		18.7
(1.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172652_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16126
Sequence Type Exemplar sequence
Representative Public ID C02B8.7 NCBI
Target Description C02B8.7 /REP_DB=WormBase Gene ID /WP=CE03896 /TR=SW:Q11097 /GB=AAA81440.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076969 NCBI Caenorhabditis elegans C02B8.7 (C02B8.7) mRNA, complete cds. 11/11 None
SNAP00000001640 ENSEMBL cdna:SNAP chromosome:CEL140:X:8137661:8137819:-1 11/11 None
C02B8.7 ENSEMBL cdna:known chromosome:CEL140:X:8137661:8137819:-1 gene:C02B8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076970 1/11 Cross Hyb Matching Probes A 
SNAP00000001641 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001646 1/11 Cross Hyb Matching Probes None
C02B8.3 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8137659-8137818(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B8.7
Entrez Gene 182106 Entrez gene
SwissProt Q11097 EMBL-EBI
WormBase CE03896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81440 Hypothetical protein C02B8.7 [Caenorhabditis elegans] ref|NP_509370.1| C02B8.7 [Caenorhabditis elegans] sp|Q11097|YWZ7_CAEEL Hypothetical protein C02B8.7 in chromosome X 3.0E-13
blast AAA81441 Hypothetical protein C02B8.3 [Caenorhabditis elegans] ref|NP_509371.1| C02B8.3 [Caenorhabditis elegans] sp|Q11093|YWZ3_CAEEL Hypothetical protein C02B8.3 in chromosome X 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:172652_X_AT
gctgtccaagatgcccaagatcaactcaccaagctcatacgttgctgggagcccattgac
tccgacgacctttccaagggctatacaatgagtgacctcgtgtaccaagttagtagctac
gtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTCCAAGATGCCCAAGATCAAC 571 295 19 Antisense
CAAGATCAACTCACCAAGCTCATAC 152 185 34 Antisense
CTCACCAAGCTCATACGTTGCTGGG 311 229 43 Antisense
ACGTTGCTGGGAGCCCATTGACTCC 581 91 57 Antisense
CGACGACCTTTCCAAGGGCTATACA 295 249 81 Antisense
ACCTTTCCAAGGGCTATACAATGAG 271 41 86 Antisense
AGGGCTATACAATGAGTGACCTCGT 110 59 95 Antisense
ATGAGTGACCTCGTGTACCAAGTTA 250 45 106 Antisense
GAGTGACCTCGTGTACCAAGTTAGT 461 399 108 Antisense
GACCTCGTGTACCAAGTTAGTAGCT 601 377 112 Antisense
CGTGTACCAAGTTAGTAGCTACGTG 319 239 117 Antisense
Sequence Source Affymetrix Proprietary Database