[Home] | [Total List]

[172651_x_at]

Description C03C10.5 /REP_DB=WormBase Gene ID /WP=CE00876 /TR=SW:P42172 /GB=CAA84686.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.6
(-3)
A 		0.9
(-2.1)
A 		2.5
(3)
A 		1
(-1.7)
A 		2
B 0.7
(-3)
A 		1.2
(2)
A 		1.3
(3)
A 		1.2
(2)
A 		1
C 0.7
(-2.3)
A 		1
(-1.6)
A 		0.4
(-3)
A 		2.9
(3)
A 		3
avr 0.7
(-3) 		1
(-1.2) 		1.4
(1.2) 		1.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 3.9
(-2.5)
A 		2.7
(-2.7)
A 		2.4
(-2.7)
A 		0.7
(-3)
A 		1.4
(-2.9)
A 		38
(3)
A 		37
B 23.9
(1.7)
A 		1.3
(-2.9)
A 		6.6
(-1.8)
A 		1
(-3)
A 		0.9
(-3)
A 		30
(3)
P 		29
C 6.8
(-2.3)
A 		0.7
(-3)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		0.7
(-3)
A 		50.8
(3)
P 		50
avr 11.5
(-1.4) 		1.6
(-2.9) 		3.4
(-2.6) 		0.9
(-3) 		1
(-3) 		39.6
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.2
(-3)
A 		0.2
(-3)
A 		0.7
(3)
A 		0.2
(-3)
A 		1
B 0.2
(-3)
A 		0.3
(3)
A 		0.3
(3)
A 		0.2
(-3)
A 		0
C 0.2
(-1.5)
A 		0.3
(-0)
A 		0.1
(-3)
A 		0.5
(3)
A 		0
avr 0.2
(-3) 		0.3
(-0) 		0.4
(3) 		0.3
(-0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		1
(-2.5)
A 		0.5
(-2.8)
A 		0.2
(-3)
A 		0.4
(-2.9)
A 		9.3
(3)
A 		9
B 8.3
(1.4)
A 		0.4
(-2.9)
A 		1.6
(-2.3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		11.2
(3)
P 		11
C 2.5
(-2.2)
A 		0.2
(-3)
A 		0.3
(-3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		17
(3)
P 		17
avr 3.8
(-1.2) 		0.5
(-2.9) 		0.8
(-2.7) 		0.2
(-3) 		0.3
(-3) 		12.5
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172651_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6590
Sequence Type Exemplar sequence
Representative Public ID C03C10.5 NCBI
Target Description C03C10.5 /REP_DB=WormBase Gene ID /WP=CE00876 /TR=SW:P42172 /GB=CAA84686.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065418 NCBI Caenorhabditis elegans C03C10.5 (C03C10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000025511 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4084762:4090529:-1 11/11 None
SNAP00000025505 ENSEMBL cdna:SNAP chromosome:CEL140:III:4089775:4090529:-1 10/11 None
C03C10.5 ENSEMBL cdna:known chromosome:CEL140:III:4090263:4090529:-1 gene:C03C10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4090262-4090529(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03C10.5
Entrez Gene 182157 Entrez gene
SwissProt P42172 EMBL-EBI
WormBase CE00876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84685 Hypothetical protein C03C10.1 [Caenorhabditis elegans] ref|NP_497818.1| protein KINase family member (kin-19) [Caenorhabditis elegans] sp|P42168|YKL1_CAEEL Putative casein kinase I C03C10.1 in chromosome III 1.0E-178
blast CAE72893 Hypothetical protein CBG20206 [Caenorhabditis briggsae] 1.0E-173
blast AAF00540 casein kinase I [Ancylostoma caninum] 1.0E-165
blast CAA84686 Hypothetical protein C03C10.5 [Caenorhabditis elegans] ref|NP_497819.1| C03C10.5 [Caenorhabditis elegans] sp|P42172|YKL5_CAEEL Hypothetical protein C03C10.5 in chromosome III 2.0E-34
blast CAA84686 Hypothetical protein C03C10.5 [Caenorhabditis elegans] ref|NP_497819.1| C03C10.5 [Caenorhabditis elegans] sp|P42172|YKL5_CAEEL Hypothetical protein C03C10.5 in chromosome III 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.1E-36
Sequence
Target Sequence 
>C. ELEGANS:172651_X_AT
gaaaatgtgttcgatcggagaaaccatttacacatggacccagaacaagcacgccaccac
ttatgtcggaacatacactaaagctttcttctcaggcgaagtttgtcgcgaaatcagaga
gcatgacgagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATGTGTTCGATCGGAGAAACC 59 353 57 Antisense
CGATCGGAGAAACCATTTACACATG 529 249 68 Antisense
GAAACCATTTACACATGGACCCAGA 382 355 76 Antisense
ACATGGACCCAGAACAAGCACGCCA 222 107 88 Antisense
CACGCCACCACTTATGTCGGAACAT 116 201 106 Antisense
GAACATACACTAAAGCTTTCTTCTC 543 351 125 Antisense
ACACTAAAGCTTTCTTCTCAGGCGA 571 109 131 Antisense
AAAGCTTTCTTCTCAGGCGAAGTTT 628 123 136 Antisense
TCTTCTCAGGCGAAGTTTGTCGCGA 710 615 143 Antisense
GAAGTTTGTCGCGAAATCAGAGAGC 239 337 154 Antisense
GCGAAATCAGAGAGCATGACGAGTT 410 289 164 Antisense
Sequence Source Affymetrix Proprietary Database