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[172648_at]

Description F54F2.6 /REP_DB=WormBase Gene ID /WP=CE00199 /TR=SW:P34451 /GB=AAK26136.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 08      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 19.8
(-3)
A 		19.7
(-3)
A 		38.6
(1.4)
A 		45.7
(3)
A 		26
B 12.5
(-3)
A 		16.6
(-2.3)
A 		21.3
(-1.4)
A 		45.9
(3)
A 		33
C 12.1
(-3)
A 		14.6
(-2.4)
A 		26
(0.4)
A 		36.7
(3)
A 		25
avr 14.8
(-3) 		17
(-2.5) 		28.6
(-0) 		42.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 37.4
(3)
A 		4
(-2.9)
A 		8
(-2.2)
A 		3.2
(-3)
A 		4.5
(-2.8)
A 		3.8
(-2.9)
A 		34
B 25.6
(1)
A 		36.6
(3)
A 		5.6
(-2.7)
A 		4.2
(-3)
A 		7
(-2.5)
A 		14.8
(-1)
A 		32
C 41.4
(2.4)
A 		45.6
(3)
A 		6.8
(-2.5)
A 		44.2
(2.8)
A 		10.9
(-1.9)
A 		3.4
(-3)
A 		42
avr 34.8
(3) 		28.7
(1.7) 		6.8
(-3) 		17.2
(-0.8) 		7.5
(-2.9) 		7.3
(-2.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 7.2
(0)
A 		4.3
(-3)
A 		10.1
(3)
A 		6.7
(-0.5)
A 		6
B 4
(-3)
A 		4.1
(-2.9)
A 		4.9
(-2.1)
A 		9.8
(3)
A 		6
C 4
(-3)
A 		4.2
(-2.8)
A 		9.1
(3)
A 		6.2
(-0.4)
A 		5
avr 5.1
(-1.6) 		4.2
(-3) 		8
(3) 		7.6
(2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.9
(3)
A 		1.4
(-2.4)
A 		1.7
(-2.1)
A 		0.8
(-3)
A 		1.4
(-2.4)
A 		0.9
(-2.9)
A 		6
B 8.9
(1.2)
A 		12.2
(3)
A 		1.4
(-2.8)
A 		1.1
(-3)
A 		2.9
(-2)
A 		5.5
(-0.6)
A 		11
C 15.3
(3)
A 		13.9
(2.4)
A 		1.7
(-2.7)
A 		8.9
(0.3)
A 		3.5
(-2)
A 		1.1
(-3)
A 		14
avr 10.4
(3) 		9.2
(2.2) 		1.6
(-3) 		3.6
(-1.6) 		2.6
(-2.3) 		2.5
(-2.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6803
Sequence Type Exemplar sequence
Representative Public ID F54F2.6 NCBI
Target Description F54F2.6 /REP_DB=WormBase Gene ID /WP=CE00199 /TR=SW:P34451 /GB=AAK26136.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066544 NCBI Caenorhabditis elegans F54F2.6 (F54F2.6) mRNA, complete cds. 11/11 None
F54F2.6 ENSEMBL cdna:known chromosome:CEL140:III:8800388:8800603:-1 gene:F54F2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8800383-8800599(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54F2.6
Entrez Gene 186252 Entrez gene
SwissProt P34451 EMBL-EBI
WormBase CE00199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK26136 Hypothetical protein F54F2.6 [Caenorhabditis elegans] ref|NP_498945.1| F54F2.6 [Caenorhabditis elegans] sp|P34451|YMA6_CAEEL Hypothetical protein F54F2.6 in chromosome III 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:172648_AT
agagaatgatgttgcctcactatgtgcgtgtgtatgtatgtgtgcgtacggacggagaaa
acgaaaaagcaggacaaagcgaggaatacgacgatgacgataaagaggaaaataagaagc
gcagacgaaacaacggccgccgggggccacccgagaaaaagaagtccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGAATGATGTTGCCTCACTATGT 551 67 23 Antisense
TGATGTTGCCTCACTATGTGCGTGT 569 565 29 Antisense
GTTGCCTCACTATGTGCGTGTGTAT 560 439 33 Antisense
GTGCGTGTGTATGTATGTGTGCGTA 497 479 46 Antisense
GTATGTATGTGTGCGTACGGACGGA 75 455 54 Antisense
GTGTGCGTACGGACGGAGAAAACGA 603 487 62 Antisense
GCAGGACAAAGCGAGGAATACGACG 604 309 91 Antisense
GAGGAATACGACGATGACGATAAAG 124 403 103 Antisense
AGAGGAAAATAAGAAGCGCAGACGA 176 57 126 Antisense
AAGCGCAGACGAAACAACGGCCGCC 335 149 139 Antisense
GGCCACCCGAGAAAAAGAAGTCCAG 369 543 167 Antisense
Sequence Source Affymetrix Proprietary Database