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[172645_x_at]

Description C28F5.3 /REP_DB=WormBase Gene ID /WP=CE01817 /TR=SW:Q09241 /GB=AAC46727.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 20.1
(-3)
A 		53.8
(1.9)
A 		61.5
(3)
A 		28.8
(-1.7)
A 		41
B 31.1
(-0)
A 		36.3
(0.8)
A 		51.1
(3)
A 		11.4
(-3)
A 		40
C 21.6
(-3)
A 		70.8
(3)
A 		41
(-0.6)
A 		38.4
(-1)
A 		49
avr 24.3
(-3) 		53.6
(3) 		51.2
(2.5) 		26.2
(-2.6) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 14.6
(-1.8)
A 		45.4
(2.2)
A 		52
(3)
A 		25.2
(-0.4)
A 		45.1
(2.1)
P 		5.2
(-3)
A 		47
B 16.4
(-2.2)
A 		44.3
(1)
A 		61.9
(3)
A 		9
(-3)
A 		39.1
(0.4)
A 		18.6
(-1.9)
A 		53
C 34.8
(1)
A 		47.1
(3)
A 		36
(1.2)
A 		25.8
(-0.4)
A 		41
(2)
A 		9.3
(-3)
A 		38
avr 21.9
(-1.3) 		45.6
(2.3) 		50
(3) 		20
(-1.6) 		41.7
(1.7) 		11
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.3
(-1.4)
A 		11.7
(0.8)
A 		16.1
(3)
A 		4.2
(-3)
A 		12
B 9.9
(1.8)
A 		9
(1.2)
A 		11.8
(3)
A 		2.4
(-3)
A 		9
C 7.2
(-2.7)
A 		20.3
(3)
A 		14.3
(0.4)
A 		6.5
(-3)
A 		14
avr 8.1
(-0.7) 		13.7
(2.8) 		14.1
(3) 		4.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		16.1
(3)
A 		11.3
(1.1)
A 		6.4
(-0.9)
A 		13.6
(2)
P 		1.3
(-3)
A 		15
B 5.7
(-1.5)
A 		14.8
(2.5)
A 		15
(2.6)
A 		2.4
(-3)
A 		15.9
(3)
A 		7
(-1)
A 		14
C 12.9
(2.2)
A 		14.4
(3)
A 		9.2
(0.2)
A 		5.2
(-1.9)
A 		13.3
(2.4)
A 		3.1
(-3)
A 		11
avr 7.1
(-1.2) 		15.1
(3) 		11.8
(1.2) 		4.7
(-2.5) 		14.3
(2.6) 		3.8
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172645_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5339
Sequence Type Exemplar sequence
Representative Public ID C28F5.3 NCBI
Target Description C28F5.3 /REP_DB=WormBase Gene ID /WP=CE01817 /TR=SW:Q09241 /GB=AAC46727.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012813 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7507377:7513898:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7510736-7510945(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE67526 Hypothetical protein CBG13047 [Caenorhabditis briggsae] 1.0E-130
blast AAC46726 Hypothetical protein C28F5.2 [Caenorhabditis elegans] ref|NP_495572.1| C28F5.2 [Caenorhabditis elegans] sp|Q09240|YQA2_CAEEL Hypothetical protein C28F5.2 in chromosome II 2.0E-66
blast CAA90269 Hypothetical protein W01C9.5 [Caenorhabditis elegans] ref|NP_495806.1| W01C9.5 [Caenorhabditis elegans] 1.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012813 1 80-102
Sequence
Target Sequence 
>C. ELEGANS:172645_X_AT
atgatcgatcatattcaatgcaagatgccaatggaccaaatggactggcccgacgaggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATCGATCATATTCAATGCAAGA 278 47 13 Antisense
GATCATATTCAATGCAAGATGCCAA 179 421 19 Antisense
TCAATGCAAGATGCCAATGGACCAA 200 633 27 Antisense
AATGCAAGATGCCAATGGACCAAAT 351 165 29 Antisense
GCAAGATGCCAATGGACCAAATGGA 115 321 32 Antisense
AAGATGCCAATGGACCAAATGGACT 121 155 34 Antisense
GATGCCAATGGACCAAATGGACTGG 463 415 36 Antisense
CCAATGGACCAAATGGACTGGCCCG 440 261 40 Antisense
CAATGGACCAAATGGACTGGCCCGA 53 183 41 Antisense
AATGGACCAAATGGACTGGCCCGAC 310 163 42 Antisense
CCAAATGGACTGGCCCGACGAGGCA 39 275 48 Antisense
Sequence Source Affymetrix Proprietary Database