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[172644_at]

Description T19C3.3 /REP_DB=WormBase Gene ID /WP=CE02054 /TR=SW:Q10009 /GB=AAC46594.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 62.6
(3)
A 		28.3
(-0.6)
A 		5.3
(-3)
A 		5.5
(-3)
A 		57
B 5.2
(-2.9)
A 		4.3
(-3)
A 		41.8
(3)
A 		5.3
(-2.8)
A 		38
C 10.9
(-3)
A 		16.6
(-1.9)
A 		41
(3)
A 		12.3
(-2.7)
A 		30
avr 26.2
(2.1) 		16.4
(-0.6) 		29.4
(3) 		7.7
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 56.2
(3)
A 		28.4
(-0.3)
A 		7.6
(-2.8)
A 		40.5
(1.1)
A 		5.8
(-3)
A 		23
(-1)
A 		50
B 8.4
(-2.6)
A 		27.5
(3)
A 		7
(-3)
A 		12.8
(-1.3)
A 		14.1
(-0.9)
A 		10
(-2.1)
A 		21
C 11.2
(-2)
A 		6.2
(-2.5)
A 		5.3
(-2.6)
A 		61.7
(3)
A 		30.7
(-0.1)
A 		1.6
(-3)
A 		60
avr 25.3
(0.5) 		20.7
(-0.3) 		6.6
(-3) 		38.3
(3) 		16.9
(-1.1) 		11.5
(-2.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.8
(3)
A 		6.1
(-1.6)
A 		1.4
(-2.8)
A 		0.8
(-3)
A 		22
B 1.7
(-2.6)
A 		1.1
(-3)
A 		9.7
(3)
A 		1.1
(-3)
A 		9
C 3.6
(-2.3)
A 		4.8
(-1.7)
A 		14.3
(3)
A 		2.1
(-3)
A 		12
avr 9.4
(3) 		4
(-1) 		8.5
(2.3) 		1.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.4
(3)
A 		10.1
(2.8)
A 		1.7
(-3)
A 		10.3
(2.9)
A 		1.8
(-2.9)
A 		5.6
(-0.3)
A 		9
B 2.9
(-2)
A 		9.2
(3)
A 		1.7
(-3)
A 		3.4
(-1.6)
A 		5.7
(0.2)
A 		3.7
(-1.4)
A 		8
C 4.1
(-1.2)
A 		1.9
(-2.3)
A 		1.4
(-2.6)
A 		12.4
(3)
A 		9.9
(1.7)
A 		0.6
(-3)
A 		12
avr 5.8
(0.5) 		7.1
(1.6) 		1.6
(-3) 		8.7
(3) 		5.8
(0.5) 		3.3
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8347
Sequence Type Exemplar sequence
Representative Public ID T19C3.3 NCBI
Target Description T19C3.3 /REP_DB=WormBase Gene ID /WP=CE02054 /TR=SW:Q10009 /GB=AAC46594.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064818
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T19C3.3 ENSEMBL cdna:known chromosome:CEL140:III:610884:614546:-1 gene:T19C3.3 None
NM_064818 NCBI Caenorhabditis elegans T19C3.3 (T19C3.3) mRNA, complete cds. None
GENEFINDER00000033754 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:611003:614523:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:614340-614523(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19C3.3
Entrez Gene 188586 Entrez gene
SwissProt Q10009 EMBL-EBI
WormBase CE30183 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46594 Hypothetical protein T19C3.3 [Caenorhabditis elegans] ref|NP_497219.2| T19C3.3 [Caenorhabditis elegans] sp|Q10009|YSV3_CAEEL Hypothetical protein T19C3.3 in chromosome III 4.0E-34
blast CAE69223 Hypothetical protein CBG15263 [Caenorhabditis briggsae] 2.0E-28
blast T16885 hypothetical protein T19C3.1 - Caenorhabditis elegans 1.0E-22
Sequence
Target Sequence 
>C. ELEGANS:172644_AT
ctccattgaccccacatgtaagtagtaggagggtaatcgactggaatctcattgggaccc
accaaaacgtattgtttttcataaaaacggaacatatttgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCATTGACCCCACATGTAAGTAG 401 231 62 Antisense
TTGACCCCACATGTAAGTAGTAGGA 532 685 67 Antisense
GACCCCACATGTAAGTAGTAGGAGG 121 381 69 Antisense
GTAGGAGGGTAATCGACTGGAATCT 371 439 86 Antisense
GAGGGTAATCGACTGGAATCTCATT 142 403 90 Antisense
GACTGGAATCTCATTGGGACCCACC 196 375 100 Antisense
CTGGAATCTCATTGGGACCCACCAA 242 241 102 Antisense
GAATCTCATTGGGACCCACCAAAAC 349 325 105 Antisense
ATCTCATTGGGACCCACCAAAACGT 206 29 107 Antisense
CATTGGGACCCACCAAAACGTATTG 82 205 111 Antisense
TCATAAAAACGGAACATATTTGGGG 656 363 140 Antisense
Sequence Source Affymetrix Proprietary Database