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[172642_s_at]

Description F23F12.2 /REP_DB=WormBase Gene ID /WP=CE01249 /TR=SW:P46498 /GB=AAA20604.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 58      6grp_total > 38      4grp_total > 22      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 303.8
(2.9)
P 		121.2
(-3)
A 		132.6
(-2.6)
A 		305.6
(3)
P 		184
B 209.6
(0.8)
P 		210.4
(0.9)
A 		117.6
(-3)
A 		261.6
(3)
P 		144
C 312.4
(3)
P 		172.6
(-3)
A 		182.5
(-2.6)
A 		294.3
(2.2)
P 		140
avr 275.3
(2.5) 		168.1
(-2) 		144.2
(-3) 		287.2
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 322.2
(1.6)
P 		346.1
(2.5)
P 		309.8
(1.1)
P 		204.4
(-3)
P 		304.5
(0.9)
P 		358.7
(3)
P 		154
B 417
(3)
P 		276.5
(-0.3)
P 		160.8
(-3)
P 		267.1
(-0.5)
P 		291
(0)
P 		409.5
(2.8)
P 		256
C 385.8
(1.6)
P 		459.3
(3)
P 		151.8
(-3)
A 		298.9
(-0.1)
A 		218.8
(-1.7)
P 		432.9
(2.5)
P 		308
avr 375
(2.2) 		360.6
(1.8) 		207.5
(-3) 		256.8
(-1.5) 		271.4
(-1) 		400.4
(3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 110.6
(3)
P 		26.3
(-3)
A 		34.7
(-2.4)
A 		44.7
(-1.7)
P 		84
B 66.8
(3)
P 		52
(0.8)
A 		27.2
(-3)
A 		55.7
(1.3)
P 		40
C 103.4
(3)
P 		49.6
(-3)
A 		63.6
(-1.4)
A 		49.6
(-3)
P 		54
avr 93.6
(3) 		42.6
(-2.9) 		41.8
(-3) 		50
(-2.1) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 59.4
(-2.4)
P 		123.1
(3)
P 		67.5
(-1.7)
P 		51.8
(-3)
P 		91.9
(0.4)
P 		87.3
(-0)
P 		71
B 145.1
(2.6)
P 		92
(-0.2)
P 		39
(-3)
P 		70.8
(-1.3)
P 		118.2
(1.2)
P 		152.7
(3)
P 		114
C 143
(2.9)
P 		140.1
(2.7)
P 		38.6
(-3)
A 		60.1
(-1.8)
A 		70.8
(-1.2)
P 		144.9
(3)
P 		106
avr 115.8
(2.1) 		118.4
(2.3) 		48.4
(-3) 		60.9
(-2.1) 		93.6
(0.4) 		128.3
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172642_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7081
Sequence Type Exemplar sequence
Representative Public ID F23F12.2 NCBI
Target Description F23F12.2 /REP_DB=WormBase Gene ID /WP=CE01249 /TR=SW:P46498 /GB=AAA20604.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069549 NCBI Caenorhabditis elegans T07G12.8 (T07G12.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000039917 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6505191:6508174:1 11/11 None
GENEFINDER00000026272 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10553649:10555343:1 11/11 None
T07G12.8 ENSEMBL cdna:known chromosome:CEL140:IV:10553453:10554140:1 gene:T07G12.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6505189-6505423(+) 75.81 100.0
chrIV:10553654-10553890(+) 73.12 97.31
chrI:12605993-12606237(-) 72.04 90.86
Public Domain and Genome References
Gene Title
Ensembl T07G12.8
Entrez Gene 177947 Entrez gene
SwissProt O18060 EMBL-EBI
WormBase CE13401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498433 F23F12.3 [Caenorhabditis elegans] gb|AAA20605.3| Hypothetical protein F23F12.3 [Caenorhabditis elegans] sp|P46499|YLX3_CAEEL Hypothetical protein F23F12.3 in chromosome III 0.0
blast AAY86205 Hypothetical protein F23F12.13 [Caenorhabditis elegans] 1.0E-124
blast CAE73649 Hypothetical protein CBG21150 [Caenorhabditis briggsae] 1.0E-124
blast CAB05277 Hypothetical protein T07G12.6 [Caenorhabditis elegans] 1.0E-118
blast NP_501951 T07G12.13 [Caenorhabditis elegans] 1.0E-116
blast T24679 hypothetical protein T07G12.9 - Caenorhabditis elegans 1.0E-115
blast CAB05273 Hypothetical protein T07G12.8 [Caenorhabditis elegans] ref|NP_501950.1| T07G12.8 [Caenorhabditis elegans] 1.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 7.6E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501950.1 1 45-67
T07G12.8 1 45-67
GENEFINDER00000039917 9 50-67,74-96,123-145,221-243,263-285,292-312,327-349,361-383,388-410
GENEFINDER00000026272 1 45-62
Sequence
Target Sequence 
>C. ELEGANS:172642_S_AT
ccaccaacacgctcacgtggactgtgatatttcaactggacgattattcatcaccgactt
caacaatcaccgactcctgtcgcctcgtcgcctcggaacgtgtcacctacatcgaccaac
ccgtccccatccgaataattttctattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCAACACGCTCACGTGGACTGT 592 273 21 Antisense
CACCAACACGCTCACGTGGACTGTG 303 203 22 Antisense
ACCAACACGCTCACGTGGACTGTGA 438 83 23 Antisense
CCAACACGCTCACGTGGACTGTGAT 629 275 24 Antisense
CAACACGCTCACGTGGACTGTGATA 258 189 25 Antisense
ACACGCTCACGTGGACTGTGATATT 648 109 27 Antisense
CACGCTCACGTGGACTGTGATATTT 706 199 28 Antisense
GATTATTCATCACCGACTTCAACAA 139 429 62 Antisense
CGTCCCCATCCGAATAATTTTCTAT 75 247 142 Antisense
GTCCCCATCCGAATAATTTTCTATT 484 475 143 Antisense
TCCCCATCCGAATAATTTTCTATTT 192 589 144 Antisense
Sequence Source Affymetrix Proprietary Database