[Home] | [Total List]

[172640_x_at]

Description C30G12.5 /REP_DB=WormBase Gene ID /WP=CE01836 /TR=SW:Q09258 /GB=AAC46674.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 171.5
(-1.7)
P 		285.6
(1.6)
M 		333.3
(3)
A 		126.9
(-3)
A 		206
B 210.6
(-0.8)
A 		348.9
(3)
A 		219.3
(-0.6)
A 		133
(-3)
A 		216
C 235
(-0.1)
A 		318
(3)
A 		226.4
(-0.4)
A 		156.4
(-3)
A 		162
avr 205.7
(-0.8) 		317.5
(3) 		259.7
(1.1) 		138.8
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 298.6
(3)
M 		197.6
(-1)
A 		203.2
(-0.8)
A 		170
(-2.1)
M 		164
(-2.3)
A 		146.3
(-3)
A 		152
B 233.6
(2.9)
A 		198.6
(0.8)
P 		235.1
(3)
A 		173.2
(-0.7)
A 		201.3
(1)
P 		135.3
(-3)
A 		100
C 242.2
(1.6)
A 		189.9
(-0.4)
A 		279.3
(3)
A 		179.3
(-0.8)
P 		231.3
(1.2)
A 		122.2
(-3)
A 		157
avr 258.1
(3) 		195.4
(-0) 		239.2
(2.1) 		174.2
(-1.1) 		198.9
(0.1) 		134.6
(-3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 62.5
(0.8)
P 		62
(0.8)
M 		87.1
(3)
A 		18.6
(-3)
A 		69
B 67.2
(1)
A 		86.2
(3)
A 		50.8
(-0.7)
A 		28.3
(-3)
A 		58
C 77.8
(1.7)
A 		91.4
(3)
A 		78.9
(1.8)
A 		26.4
(-3)
A 		65
avr 69.2
(1.8) 		79.9
(3) 		72.3
(2.2) 		24.4
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 55
(0.4)
M 		70.3
(3)
A 		44.3
(-1.5)
A 		43.1
(-1.7)
M 		49.5
(-0.6)
A 		35.6
(-3)
A 		35
B 81.3
(2.9)
A 		66.1
(0.4)
P 		57.1
(-1.1)
A 		45.9
(-3)
A 		81.8
(3)
P 		50.4
(-2.2)
A 		36
C 89.8
(3)
A 		57.9
(-0.6)
A 		71.1
(0.9)
A 		36
(-3)
P 		74.8
(1.3)
A 		40.9
(-2.5)
A 		54
avr 75.4
(3) 		64.8
(1.1) 		57.5
(-0.2) 		41.7
(-3) 		68.7
(1.8) 		42.3
(-2.9) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172640_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4286
Sequence Type Exemplar sequence
Representative Public ID C30G12.5 NCBI
Target Description C30G12.5 /REP_DB=WormBase Gene ID /WP=CE01836 /TR=SW:Q09258 /GB=AAC46674.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C30G12.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C30G12.5 C30G12.5 /REP_DB=WormBase Gene ID /WP=CE01836 /TR=SW:Q09258 /GB=AAC46674.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7273194-7273302(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172640_X_AT
ttctccaacgttccagagccaacaaagagcattaagaacattcgtcaagctcgtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCAACGTTCCAGAGCCAACAA 507 693 34 Antisense
TCTCCAACGTTCCAGAGCCAACAAA 110 611 35 Antisense
TCCAACGTTCCAGAGCCAACAAAGA 658 585 37 Antisense
CAACGTTCCAGAGCCAACAAAGAGC 313 187 39 Antisense
ACGTTCCAGAGCCAACAAAGAGCAT 342 93 41 Antisense
GTTCCAGAGCCAACAAAGAGCATTA 667 439 43 Antisense
GAGCCAACAAAGAGCATTAAGAACA 230 385 49 Antisense
AGAGCATTAAGAACATTCGTCAAGC 546 69 59 Antisense
GCATTAAGAACATTCGTCAAGCTCG 140 309 62 Antisense
ATTAAGAACATTCGTCAAGCTCGTC 168 11 64 Antisense
TAAGAACATTCGTCAAGCTCGTCTT 529 625 66 Antisense
Sequence Source Affymetrix Proprietary Database