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[172639_at]

Description Y113G7B.20 /REP_DB=WormBase Gene ID /WP=CE23300 /TR=Q9NAL3 /GB=CAB76741.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 5.2
(3)
A 		2.6
(-2.2)
A 		2.2
(-3)
A 		4.5
(1.6)
A 		3
B 4.6
(0.7)
A 		3.6
(-0.9)
A 		2.3
(-3)
A 		6
(3)
A 		4
C 3.6
(-2.3)
A 		4.7
(-1.9)
A 		1.3
(-3)
A 		20
(3)
A 		19
avr 4.5
(-1.1) 		3.6
(-1.8) 		1.9
(-3) 		10.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.2
(3)
A 		2.1
(-3)
A 		3.7
(-0.7)
A 		3.6
(-0.8)
A 		3.9
(-0.4)
A 		3
(-1.7)
A 		4
B 1.7
(-1.1)
A 		1.4
(-2.1)
A 		3
(3)
A 		1.9
(-0.5)
A 		1.1
(-3)
A 		2.5
(1.4)
A 		2
C 2.7
(-1.3)
A 		1.9
(-3)
A 		3.3
(-0)
A 		2.4
(-1.9)
A 		2.2
(-2.4)
A 		4.7
(3)
A 		3
avr 3.5
(3) 		1.8
(-3) 		3.3
(2.3) 		2.6
(-0.2) 		2.4
(-0.9) 		3.4
(2.6) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.9
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.7
(-2.5)
A 		1
B 1.5
(3)
A 		0.9
(-0.6)
A 		0.5
(-3)
A 		1.3
(1.8)
A 		1
C 1.2
(-1.6)
A 		1.4
(-1.1)
A 		0.5
(-3)
A 		3.4
(3)
A 		3
avr 1.5
(1.6) 		1
(-0.7) 		0.5
(-3) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.1
(1.8)
A 		0.7
(-3)
A 		0.8
(-1.8)
A 		0.9
(-0.6)
A 		1.2
(3)
A 		0.7
(-3)
A 		1
B 0.6
(-1.5)
A 		0.5
(-3)
A 		0.7
(-0)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.9
(3)
A 		0
C 1
(-0.3)
A 		0.6
(-2.5)
A 		0.8
(-1.4)
A 		0.5
(-3)
A 		0.7
(-1.9)
A 		1.6
(3)
A 		1
avr 0.9
(0.6) 		0.6
(-3) 		0.8
(-0.6) 		0.6
(-3) 		0.8
(-0.6) 		1.1
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14007
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.20 NCBI
Target Description Y113G7B.20 /REP_DB=WormBase Gene ID /WP=CE23300 /TR=Q9NAL3 /GB=CAB76741.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y113G7B.20
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y113G7B.20 Y113G7B.20 /REP_DB=WormBase Gene ID /WP=CE23300 /TR=Q9NAL3 /GB=CAB76741.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:219971-220090(+) 37.25 45.49
Sequence
Target Sequence 
>C. ELEGANS:172639_AT
gatattttgatagtttcttgctgagagttgggaacatttgggaagatgtgaaagtttcat
tattttttcataagacatttttaaatgattgtgtcaaacatttcaaatgttgccagtcgt
tggccgcgtcaaaagccaacttcggacacggatgtgacacggaaaaatgggagaaattca
tgattttggtcaaaatcaagcagtttcattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTTTGATAGTTTCTTGCTGAG 407 427 20 Antisense
GTTTCTTGCTGAGAGTTGGGAACAT 37 449 32 Antisense
GAGAGTTGGGAACATTTGGGAAGAT 529 391 42 Antisense
CATTTCAAATGTTGCCAGTCGTTGG 397 215 118 Antisense
CAGTCGTTGGCCGCGTCAAAAGCCA 468 205 133 Antisense
TGGCCGCGTCAAAAGCCAACTTCGG 215 543 140 Antisense
GCGTCAAAAGCCAACTTCGGACACG 455 291 145 Antisense
AGCCAACTTCGGACACGGATGTGAC 23 85 153 Antisense
TTCGGACACGGATGTGACACGGAAA 689 647 160 Antisense
GGGAGAAATTCATGATTTTGGTCAA 510 495 188 Antisense
GGTCAAAATCAAGCAGTTTCATTAC 428 503 207 Antisense
Sequence Source Affymetrix Proprietary Database