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[172638_x_at]

Description Y76B12C.5 /REP_DB=WormBase Gene ID /WP=CE23060 /TR=Q9N4C5 /GB=AAF36061.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 54      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 51.4
(-3)
P 		85.2
(3)
A 		61.9
(-1.1)
P 		71.4
(0.6)
A 		34
B 77.7
(-3)
A 		119.2
(2)
P 		127.8
(3)
P 		104.6
(0.2)
P 		50
C 82.8
(-3)
P 		114.8
(2.2)
P 		83.1
(-3)
A 		119.8
(3)
P 		37
avr 70.6
(-3) 		106.4
(3) 		90.9
(0.4) 		98.6
(1.7) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 101.8
(2.1)
P 		73.9
(-1.4)
P 		109.1
(3)
A 		76.5
(-1.1)
A 		61.4
(-3)
A 		92.8
(0.9)
A 		48
B 47
(-3)
A 		79
(2.6)
P 		61.6
(-0.4)
A 		81
(3)
A 		52.4
(-2)
A 		72.3
(1.5)
A 		34
C 33
(-3)
M 		94.6
(3)
P 		92.9
(2.8)
A 		50.4
(-1.3)
A 		56.2
(-0.7)
A 		56
(-0.8)
A 		62
avr 60.6
(-2.3) 		82.5
(2) 		87.9
(3) 		69.3
(-0.6) 		56.7
(-3) 		73.7
(0.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 18.7
(3)
P 		18.5
(2.9)
A 		16.2
(1.2)
P 		10.5
(-3)
A 		8
B 24.8
(-0.9)
A 		29.5
(2.9)
P 		29.6
(3)
P 		22.3
(-3)
P 		7
C 27.4
(0.4)
P 		33
(3)
P 		29
(1.1)
A 		20.2
(-3)
P 		13
avr 23.6
(0.8) 		27
(3) 		24.9
(1.6) 		17.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 18.8
(-2.8)
P 		26.3
(3)
P 		23.8
(1.1)
A 		19.4
(-2.3)
A 		18.5
(-3)
A 		22.6
(0.2)
A 		8
B 16.4
(-2.3)
A 		26.3
(2.7)
P 		15
(-3)
A 		21.4
(0.2)
A 		21.3
(0.2)
A 		27
(3)
A 		12
C 12.2
(-2.3)
M 		28.9
(3)
P 		23.7
(1.3)
A 		10.1
(-3)
A 		18.2
(-0.4)
A 		18.8
(-0.2)
A 		19
avr 15.8
(-3) 		27.2
(3) 		20.8
(-0.4) 		17
(-2.4) 		19.3
(-1.2) 		22.8
(0.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172638_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10604
Sequence Type Exemplar sequence
Representative Public ID Y76B12C.5 NCBI
Target Description Y76B12C.5 /REP_DB=WormBase Gene ID /WP=CE23060 /TR=Q9N4C5 /GB=AAF36061.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067753(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067753 NCBI Caenorhabditis elegans Y76B12C.5 (Y76B12C.5) mRNA, complete cds. 11/11 None
SNAP00000007753 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1981934:1984750:-1 11/11 None
GENEFINDER00000007760 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1981934:1984750:-1 11/11 None
Y76B12C.5 ENSEMBL cdna:known chromosome:CEL140:IV:1981934:1984750:-1 gene:Y76B12C.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075922 8/11 Cross Hyb Matching Probes A 
NM_066214 2/11 Cross Hyb Matching Probes A 
NM_059031 4/11 Cross Hyb Matching Probes A 
NM_068720 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000028191 4/11 Cross Hyb Matching Probes None
SNAP00000028189 4/11 Cross Hyb Matching Probes None
SNAP00000043608 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043621 2/11 Cross Hyb Matching Probes None
SNAP00000032856 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032865 2/11 Cross Hyb Matching Probes None
SNAP00000003803 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003821 1/11 Cross Hyb Matching Probes None
SNAP00000021928 8/11 Cross Hyb Matching Probes None
GENEFINDER00000021982 8/11 Cross Hyb Matching Probes None
W09C3.8 4/11 Cross Hyb Matching Probes A 
F02E9.8 6/11 Cross Hyb Matching Probes A 
F56C9.2 2/11 Cross Hyb Matching Probes A 
C34D4.5 1/11 Cross Hyb Matching Probes A 
Y75D11A.4 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7325685-7328476(+) 92.4 92.4
chrIV:1981939-1984756(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y76B12C.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500154 Y76B12C.5 [Caenorhabditis elegans] 0.0
blast AAB00700 Hypothetical protein C34D4.5 [Caenorhabditis elegans] ref|NP_501121.1| C34D4.5 [Caenorhabditis elegans] 0.0
blast NP_498615 F56C9.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.1E-11
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 7.8E-42
Sequence
Target Sequence 
>C. ELEGANS:172638_X_AT
ctgctctccaagctattctgacggattgcgacaacgagctcgctggagttggcatcagtg
tggaaggcagacacataagaagactcgaatttgcggatgacgtagtcttgatatgctcca
caccggaagaagttcaagaacgactggaaattttggaccgaataagttctaattacggac
tcaagatcaatcagtcaaagactgttcttctgaagaacaagttttgccggagccaagaca
tccttttcaacggatcccccatcattcccgtgcctggctgccgctatctgggtcgctgga
tcgacatttcgggctcaattgacgaagagatctcgaggagaataagagcaggttggggtg
ctctggttggaatcaaagaagtcttgagaatcatgccaaacaaggaaagaatcatcctct
tcaagcaaaatgtgctaccagccctcctgtatgctagtgaaacttggacttgtaatgctg
gatccacgttgagactcaaaagaactgtcaccggtcttatcgacgctgcagaaattcgag
gctggaacttcaacttggaacgttacctccttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTCTCCAAGCTATTCTGACGGA 461 237 2207 Antisense
CGAGCTCGCTGGAGTTGGCATCAGT 550 249 2241 Antisense
GACGTAGTCTTGATATGCTCCACAC 595 377 2305 Antisense
GTTTTGCCGGAGCCAAGACATCCTT 580 447 2427 Antisense
CCGCTATCTGGGTCGCTGGATCGAC 327 263 2487 Antisense
GCTGGATCGACATTTCGGGCTCAAT 37 295 2501 Antisense
GTTGGGGTGCTCTGGTTGGAATCAA 190 437 2558 Antisense
CCAGCCCTCCTGTATGCTAGTGAAA 348 273 2644 Antisense
ATGCTGGATCCACGTTGAGACTCAA 558 41 2681 Antisense
AAAGAACTGTCACCGGTCTTATCGA 382 123 2705 Antisense
CAACTTGGAACGTTACCTCCTTGCA 139 187 2757 Antisense
Sequence Source Affymetrix Proprietary Database