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[172637_x_at]

Description F56B3.11A /REP_DB=WormBase Gene ID /WP=CE25907 /TR=Q9TXR7 /GB=AAK29831.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 67      6grp_total > 40      4grp_total > 25      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1783
1 2 3 4 range
A 2059.5
(-3)
P 		3220.5
(1)
P 		3119.4
(0.7)
P 		3779.6
(3)
P 		1720
B 1996.9
(-3)
P 		2682.2
(-0.6)
P 		3240.5
(1.4)
P 		3697.9
(3)
P 		1701
C 2109.8
(-3)
P 		2976.1
(0.5)
P 		2826.5
(-0.1)
P 		3598
(3)
P 		1488
avr 2055.4
(-3) 		2959.6
(0.3) 		3062.1
(0.7) 		3691.8
(3) 		1636

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1178
1 2 3 4 5 6 range
A 2266.7
(2.9)
P 		1857.5
(-0.5)
P 		2278.5
(3)
P 		1882.7
(-0.3)
P 		1554.4
(-3)
P 		1594.8
(-2.7)
P 		724
B 1885.2
(-1.1)
P 		2200.5
(1.2)
P 		2440.5
(3)
P 		1957.2
(-0.5)
P 		1621.5
(-3)
P 		1810.5
(-1.6)
P 		819
C 1745.3
(0.6)
P 		1829.4
(1.2)
P 		1906.8
(1.8)
P 		2076.2
(3)
P 		1262.3
(-3)
P 		1968.3
(2.2)
P 		814
avr 1965.7
(1) 		1962.5
(1) 		2208.6
(3) 		1972
(1.1) 		1479.4
(-3) 		1791.2
(-0.4) 		729
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 432
1 2 3 4 range
A 749.9
(1.5)
P 		699.1
(0.3)
P 		815.5
(3)
P 		553.3
(-3)
P 		262
B 636.8
(-3)
P 		662.4
(-2)
P 		750.9
(1.5)
P 		788
(3)
P 		151
C 698.4
(-1.5)
P 		855.6
(0.9)
P 		985.1
(3)
P 		606.7
(-3)
P 		378
avr 695
(-1.6) 		739
(-0.3) 		850.5
(3) 		649.3
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 417.8
(-2.3)
P 		660.6
(3)
P 		496.2
(-0.6)
P 		477.5
(-1)
P 		469
(-1.2)
P 		388.3
(-3)
P 		272
B 655.9
(0.9)
P 		732.5
(3)
P 		592.6
(-0.9)
P 		518.4
(-3)
P 		658.8
(0.9)
P 		675.1
(1.4)
P 		214
C 646.9
(2.7)
P 		558.2
(0.6)
P 		485.3
(-1.2)
P 		417.5
(-2.8)
P 		408.4
(-3)
P 		658.9
(3)
P 		251
avr 573.5
(0.4) 		650.4
(3) 		524.7
(-1.2) 		471.1
(-3) 		512.1
(-1.6) 		574.1
(0.4) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172637_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10976
Sequence Type Exemplar sequence
Representative Public ID F56B3.11A NCBI
Target Description F56B3.11A /REP_DB=WormBase Gene ID /WP=CE25907 /TR=Q9TXR7 /GB=AAK29831.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067590(11), NM_067591(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067590 NCBI Caenorhabditis elegans F56B3.11a (F56B3.11) mRNA, complete cds. 11/11 A 
NM_067591 NCBI Caenorhabditis elegans F56B3.11b (F56B3.11) mRNA, complete cds. 10/11 A 
SNAP00000041569 ENSEMBL cdna:SNAP chromosome:CEL140:IV:794752:796459:-1 10/11 None
GENEFINDER00000041581 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:795818:796562:-1 11/11 None
F56B3.11a ENSEMBL cdna:known chromosome:CEL140:IV:795806:796562:-1 gene:F56B3.11 11/11 A 
F56B3.11b ENSEMBL cdna:known chromosome:CEL140:IV:795824:796562:-1 gene:F56B3.11 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:795823-796568(-) 100.0 100.0
Public Domain and Genome References
Ensembl F56B3.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast F88632 protein F56B3.4 [imported] - Caenorhabditis elegans 1.0E-159
blast AAK29831 Hypothetical protein F56B3.11a [Caenorhabditis elegans] ref|NP_499991.1| F56B3.11a [Caenorhabditis elegans] 1.0E-119
blast F88632 protein F56B3.4 [imported] - Caenorhabditis elegans 1.0E-107
blast AAK29832 Hypothetical protein F56B3.11b [Caenorhabditis elegans] ref|NP_499992.1| F56B3.11b [Caenorhabditis elegans] 1.0E-104
blast CAE56267 Hypothetical protein CBG23912 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001232 EMBL-EBI SKP1 component 7.5E-24
Pfam IPR001232 EMBL-EBI SKP1 component 4.6E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499991.1 1 81-103
NP_499992.1 1 81-103
F56B3.11a 1 81-103
F56B3.11b 1 81-103
SNAP00000041569 1 63-85
GENEFINDER00000041581 1 81-103
Sequence
Target Sequence 
>C. ELEGANS:172637_X_AT
ggaacatgcgctccagagatcgattttggaggaagttttggtgcatgagaaggcgaaacc
gacgacatttggcggaaaagtcgctgaaaaggcgtcgaacacgtttatgtacacggcagt
tgtcgctggaatcggtctaattggtgcatttatctatgtgctcgccggggaatttttcgc
tcaagattccccgcagacaattttcaataaagctctcgcattggtacgtgatgatggccg
ttgtcaggaaatattcggcgcctcaatcgccggattcggcgaggaaacgtcacgtggacg
ccgccgccacgtggcacatcacaagtacgagaaggacggaatgcagcggattcgggtgct
tttccacgtgaaaggagaccgagatgagggaattgctcaagctgaaatggagcaacgaga
cggagattggcagtggcggttcttgtatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACATGCGCTCCAGAGATCGATT 254 529 153 Antisense
GTACACGGCAGTTGTCGCTGGAATC 26 461 261 Antisense
GGTGCATTTATCTATGTGCTCGCCG 518 501 295 Antisense
TCGCCGGGGAATTTTTCGCTCAAGA 643 593 314 Antisense
GATTCCCCGCAGACAATTTTCAATA 250 433 337 Antisense
TAAAGCTCTCGCATTGGTACGTGAT 223 641 360 Antisense
GGTACGTGATGATGGCCGTTGTCAG 63 503 375 Antisense
TATTCGGCGCCTCAATCGCCGGATT 560 659 404 Antisense
CGCCACGTGGCACATCACAAGTACG 309 257 457 Antisense
AATGCAGCGGATTCGGGTGCTTTTC 592 163 492 Antisense
ATTGGCAGTGGCGGTTCTTGTATGT 243 3 578 Antisense
Sequence Source Affymetrix Proprietary Database