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[172636_at]

Description F35F10.14 /REP_DB=WormBase Gene ID /WP=CE09939 /TR=Q9GYT1 /GB=AAF99927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 44
(-0.5)
P 		5.1
(-3)
A 		34.1
(-1.1)
A 		98.8
(3)
A 		94
B 36.8
(-2.3)
A 		33.2
(-3)
A 		39.9
(-1.7)
A 		63.5
(3)
P 		30
C 45
(-0.7)
A 		4.7
(-3)
A 		25
(-1.8)
A 		110.4
(3)
P 		106
avr 41.9
(-0.8) 		14.3
(-3) 		33
(-1.5) 		90.9
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 76.1
(3)
A 		37.8
(-1.7)
P 		27.5
(-3)
A 		45.2
(-0.8)
M 		31.5
(-2.5)
P 		60
(1)
P 		49
B 35.1
(-1.8)
A 		35.8
(-1.6)
A 		29.6
(-3)
A 		56.2
(3)
P 		54.2
(2.5)
P 		47.2
(1)
P 		27
C 32.5
(0.1)
A 		19.7
(-3)
A 		25.2
(-1.7)
A 		44.2
(3)
A 		32.2
(0.1)
A 		31.5
(-0.1)
A 		25
avr 47.9
(2.8) 		31.1
(-1.9) 		27.4
(-3) 		48.5
(3) 		39.3
(0.4) 		46.2
(2.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16
(3)
P 		1.1
(-3)
A 		8.9
(0.1)
A 		14.5
(2.4)
A 		15
B 11.7
(1)
A 		8.2
(-3)
A 		9.2
(-1.9)
A 		13.5
(3)
P 		5
C 14.9
(1.7)
A 		1.4
(-3)
A 		8.7
(-0.5)
A 		18.6
(3)
P 		17
avr 14.2
(2.3) 		3.6
(-3) 		8.9
(-0.3) 		15.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 14
(2.6)
A 		13.4
(2.2)
P 		6
(-3)
A 		11.5
(0.8)
M 		9.5
(-0.6)
P 		14.6
(3)
P 		9
B 12.2
(-1)
A 		11.9
(-1.1)
A 		7.2
(-3)
A 		14.9
(0.1)
P 		22
(3)
P 		17.6
(1.2)
P 		15
C 12
(3)
A 		6
(-3)
A 		6.4
(-2.6)
A 		8.9
(-0.1)
A 		10.4
(1.4)
A 		10.6
(1.6)
A 		6
avr 12.7
(1.8) 		10.4
(0) 		6.5
(-3) 		11.8
(1.1) 		14
(2.8) 		14.3
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15428
Sequence Type Exemplar sequence
Representative Public ID F35F10.14 NCBI
Target Description F35F10.14 /REP_DB=WormBase Gene ID /WP=CE09939 /TR=Q9GYT1 /GB=AAF99927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071519(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071519 NCBI Caenorhabditis elegans F35F10.14 (F35F10.14) mRNA, complete cds. 10/11 None
F35F10.14 ENSEMBL cdna:known chromosome:CEL140:V:3319316:3319501:-1 gene:F35F10.14 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3319328-3319501(-) 100.0 100.0
chrV:3395100-3395272(-) 93.33 93.33
Public Domain and Genome References
Gene Title
Ensembl F35F10.14
Entrez Gene 185317 Entrez gene
SwissProt Q9GYT1 EMBL-EBI
WormBase CE35866 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99927 Hypothetical protein F35F10.14 [Caenorhabditis elegans] ref|NP_503920.2| F35F10.14 [Caenorhabditis elegans] 1.0E-16
Sequence
Target Sequence 
>C. ELEGANS:172636_AT
atgactgcctcaagaaggaaatcagtgaaacttgtagccaacaagaatggaacaagttcc
caattcgtcaatctatcttatatgcttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTGCCTCAAGAAGGAAATCAG 121 45 13 Antisense
GGAAATCAGTGAAACTTGTAGCCAA 117 527 29 Antisense
AATCAGTGAAACTTGTAGCCAACAA 305 169 32 Antisense
GTAGCCAACAAGAATGGAACAAGTT 317 457 46 Antisense
GGAACAAGTTCCCAATTCGTCAATC 30 529 61 Antisense
ACAAGTTCCCAATTCGTCAATCTAT 694 113 64 Antisense
AAGTTCCCAATTCGTCAATCTATCT 605 155 66 Antisense
GTTCCCAATTCGTCAATCTATCTTA 551 441 68 Antisense
TCCCAATTCGTCAATCTATCTTATA 202 599 70 Antisense
AATTCGTCAATCTATCTTATATGCT 422 177 74 Antisense
CGTCAATCTATCTTATATGCTTGTC 419 247 78 Antisense
Sequence Source Affymetrix Proprietary Database