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[172635_x_at]

Description Y38E10A.15 /REP_DB=WormBase Gene ID /WP=CE21595 /TR=Q9NAJ6 /GB=CAB54406.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 44      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 30.8
(1.7)
A 		38.8
(3)
A 		4.9
(-2.6)
A 		2.5
(-3)
A 		36
B 33.6
(0.4)
A 		44.1
(3)
A 		42.5
(2.6)
P 		20.1
(-3)
A 		24
C 28
(-0.1)
A 		39.1
(2.6)
A 		15.9
(-3)
A 		40.7
(3)
A 		25
avr 30.8
(-0) 		40.7
(3) 		21.1
(-3) 		21.1
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2512
1 2 3 4 5 6 range
A 2310
(3)
P 		332.2
(-2.1)
P 		125.8
(-2.7)
P 		50.8
(-2.9)
A 		3.8
(-3)
A 		7.7
(-3)
A 		2306
B 2515.8
(3)
P 		400.7
(-2.1)
P 		96.6
(-2.8)
P 		43.9
(-3)
A 		30
(-3)
A 		40.7
(-3)
P 		2486
C 2130.9
(3)
P 		403.2
(-1.9)
P 		88.5
(-2.8)
A 		49.7
(-2.9)
A 		12
(-3)
A 		42
(-2.9)
P 		2119
avr 2318.9
(3) 		378.7
(-2.1) 		103.6
(-2.8) 		48.1
(-2.9) 		15.3
(-3) 		30.1
(-3) 		2304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.2
(3)
A 		8.4
(1.4)
A 		1.3
(-2.5)
A 		0.4
(-3)
A 		11
B 10.7
(2.8)
A 		10.9
(3)
A 		9.8
(2)
P 		4.3
(-3)
A 		7
C 9.3
(1)
A 		11.2
(3)
A 		5.5
(-3)
A 		6.9
(-1.5)
A 		6
avr 10.4
(3) 		10.2
(2.8) 		5.5
(-1.5) 		3.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 874
1 2 3 4 5 6 range
A 425.8
(3)
P 		118.2
(-1.3)
P 		27.4
(-2.6)
P 		12.9
(-2.8)
A 		1.2
(-3)
A 		1.9
(-3)
A 		425
B 875.4
(3)
P 		133.4
(-2.2)
P 		23.5
(-2.9)
P 		11.6
(-3)
A 		12.2
(-3)
A 		15.2
(-3)
P 		864
C 789.8
(3)
P 		123
(-2.1)
P 		22.5
(-2.9)
A 		10
(-3)
A 		3.9
(-3)
A 		14.1
(-2.9)
P 		786
avr 697
(3) 		124.9
(-2) 		24.5
(-2.8) 		11.5
(-3) 		5.8
(-3) 		10.4
(-3) 		691
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172635_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2787
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.15 NCBI
Target Description Y38E10A.15 /REP_DB=WormBase Gene ID /WP=CE21595 /TR=Q9NAJ6 /GB=CAB54406.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064297 NCBI Caenorhabditis elegans Y38E10A.15 (Y38E10A.15) mRNA, complete cds. 11/11 None
SNAP00000017441 ENSEMBL cdna:SNAP chromosome:CEL140:II:12627107:12627377:1 11/11 None
GENEFINDER00000017463 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12627107:12627377:1 11/11 None
Y38E10A.15 ENSEMBL cdna:known chromosome:CEL140:II:12627092:12627464:1 gene:Y38E10A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12627103-12627374(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.15
Entrez Gene 189661 Entrez gene
SwissProt Q9NAJ6 EMBL-EBI
WormBase CE21595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54406 Hypothetical protein Y38E10A.15 [Caenorhabditis elegans] ref|NP_496698.1| Y38E10A.15 [Caenorhabditis elegans] 2.0E-30
blast CAE65373 Hypothetical protein CBG10318 [Caenorhabditis briggsae] emb|CAE56968.1| Hypothetical protein CBG24819 [Caenorhabditis briggsae] 4.0E-24
blast CAE65372 Hypothetical protein CBG10317 [Caenorhabditis briggsae] emb|CAE56967.1| Hypothetical protein CBG24818 [Caenorhabditis briggsae] 1.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR009853 EMBL-EBI Protein of unknown function DUF1412 4.1E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496698.1 1 5-23
Y38E10A.15 1 5-23
SNAP00000017441 1 5-23
GENEFINDER00000017463 1 5-23
Sequence
Target Sequence 
>C. ELEGANS:172635_X_AT
tcctggctacagtatccgctggaatcatccgtgatcggcgtgcaattgaagactactggt
atacaaatggagttgtgcacaatgtggttcatgacaatatggctggcggtccaacttctc
ttggatgggctcaagttccacatcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGGCTACAGTATCCGCTGGAAT 350 593 53 Antisense
CGCTGGAATCATCCGTGATCGGCGT 159 255 69 Antisense
AATCATCCGTGATCGGCGTGCAATT 85 171 75 Antisense
GATCGGCGTGCAATTGAAGACTACT 319 419 85 Antisense
GGCGTGCAATTGAAGACTACTGGTA 698 539 89 Antisense
GACTACTGGTATACAAATGGAGTTG 46 363 103 Antisense
GTGCACAATGTGGTTCATGACAATA 249 481 127 Antisense
GGTTCATGACAATATGGCTGGCGGT 226 507 138 Antisense
CAATATGGCTGGCGGTCCAACTTCT 117 181 147 Antisense
GGTCCAACTTCTCTTGGATGGGCTC 22 253 160 Antisense
GGATGGGCTCAAGTTCCACATCGAC 273 515 175 Antisense
Sequence Source Affymetrix Proprietary Database