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[172634_x_at]

Description F36H12.13 /REP_DB=WormBase Gene ID /WP=CE09983 /TR=O76713 /GB=AAC26935.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.1
(-2.3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		4.1
(3)
A 		3
B 1.2
(-3)
A 		1.5
(-2.4)
A 		1.3
(-2.8)
A 		4.4
(3)
A 		3
C 2
(-1)
A 		1.8
(-3)
A 		2.4
(3)
A 		1.8
(-3)
A 		1
avr 1.4
(-2.7) 		1.3
(-3) 		1.5
(-2.4) 		3.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.9
(-0.2)
A 		1.3
(-1.6)
A 		1.7
(-0.7)
A 		0.7
(-3)
A 		2.4
(0.9)
A 		3.3
(3)
A 		3
B 1.6
(-0.2)
A 		0.9
(-3)
A 		1.3
(-1.4)
A 		1.2
(-1.8)
A 		2.4
(3)
A 		2.3
(2.6)
A 		2
C 1.3
(-1.7)
A 		1.5
(-1.1)
A 		0.9
(-3)
A 		1.1
(-2.4)
A 		2.4
(1.7)
A 		2.8
(3)
A 		2
avr 1.6
(-1) 		1.2
(-2.3) 		1.3
(-2) 		1
(-3) 		2.4
(1.7) 		2.8
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.4
(0.6)
A 		0.1
(-3)
A 		0.2
(-1.8)
A 		0.6
(3)
A 		1
B 0.4
(-2)
A 		0.4
(-2)
A 		0.3
(-3)
A 		0.9
(3)
A 		1
C 0.7
(1.8)
A 		0.5
(-0.6)
A 		0.8
(3)
A 		0.3
(-3)
A 		1
avr 0.5
(1) 		0.3
(-3) 		0.4
(-1) 		0.6
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.3
(-2)
A 		0.5
(-0)
A 		0.4
(-1)
A 		0.2
(-3)
A 		0.7
(2)
A 		0.8
(3)
A 		1
B 0.5
(-1.3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
(3)
A 		0.9
(2.1)
A 		1
C 0.5
(-0.4)
A 		0.4
(-1.3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.8
(2.1)
A 		0.9
(3)
A 		1
avr 0.4
(-1.3) 		0.4
(-1.3) 		0.3
(-2.1) 		0.2
(-3) 		0.8
(2.1) 		0.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172634_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10752
Sequence Type Exemplar sequence
Representative Public ID F36H12.13 NCBI
Target Description F36H12.13 /REP_DB=WormBase Gene ID /WP=CE09983 /TR=O76713 /GB=AAC26935.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068360 NCBI Caenorhabditis elegans F36H12.13 (F36H12.13) mRNA, complete cds. 11/11 None
F36H12.13 ENSEMBL cdna:known chromosome:CEL140:IV:5262775:5262973:-1 gene:F36H12.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5262780-5262979(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H12.13
Entrez Gene 185398 Entrez gene
SwissProt O76713 EMBL-EBI
WormBase CE09983 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26935 Hypothetical protein F36H12.13 [Caenorhabditis elegans] ref|NP_500761.1| F36H12.13 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:172634_X_AT
tgccaccaatgcatcttctcaaaagcaaagtgcacattgccgaggctctcaatgacgaga
caactatgtcattattgaagaaaatcgtgtctaaaaaatgcatttcaaaaatttctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCACCAATGCATCTTCTCAAAAG 227 587 14 Antisense
GCATCTTCTCAAAAGCAAAGTGCAC 402 309 24 Antisense
CAAAGTGCACATTGCCGAGGCTCTC 256 193 39 Antisense
TGCACATTGCCGAGGCTCTCAATGA 145 577 44 Antisense
CACATTGCCGAGGCTCTCAATGACG 72 197 46 Antisense
TTGCCGAGGCTCTCAATGACGAGAC 336 699 50 Antisense
GAGGCTCTCAATGACGAGACAACTA 9 407 55 Antisense
GACGAGACAACTATGTCATTATTGA 609 377 67 Antisense
GTCATTATTGAAGAAAATCGTGTCT 469 467 81 Antisense
AATCGTGTCTAAAAAATGCATTTCA 185 169 96 Antisense
AAATGCATTTCAAAAATTTCTCAAT 31 119 109 Antisense
Sequence Source Affymetrix Proprietary Database