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[172633_x_at]

Description Y55H10B.1 /REP_DB=WormBase Gene ID /WP=CE22571 /TR=Q9N4R8 /GB=AAF60812.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 11      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 112.2
(-3)
P 		158.3
(-1)
P 		142.9
(-1.7)
P 		249.8
(3)
P 		138
B 138.1
(3)
P 		96.1
(-3)
P 		107.8
(-1.3)
P 		121
(0.6)
P 		42
C 151
(-0.7)
P 		153.8
(-0.6)
P 		90.9
(-3)
P 		248.6
(3)
P 		158
avr 133.8
(-1.7) 		136.1
(-1.6) 		113.9
(-3) 		206.5
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 178.2
(-0)
P 		137.3
(-1.6)
P 		111.7
(-2.6)
P 		101.4
(-3)
P 		156.1
(-0.9)
P 		256.9
(3)
P 		156
B 72
(-3)
P 		108.5
(-1.6)
P 		113.9
(-1.4)
P 		126.2
(-1)
P 		140
(-0.5)
P 		233.5
(3)
P 		162
C 120.2
(-1.7)
P 		157.7
(0.7)
P 		192.7
(3)
P 		130.5
(-1.1)
P 		100.6
(-3)
P 		186.9
(2.6)
P 		92
avr 123.5
(-2.8) 		134.5
(-2.1) 		139.4
(-1.9) 		119.4
(-3) 		132.2
(-2.3) 		225.8
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 40.8
(3)
P 		34.4
(-3)
P 		37.4
(-0.2)
P 		36.6
(-0.9)
P 		6
B 44
(3)
P 		23.7
(-3)
P 		25
(-2.6)
P 		25.8
(-2.4)
P 		20
C 50
(3)
P 		44.2
(1.1)
P 		31.7
(-3)
P 		41.9
(0.3)
P 		18
avr 44.9
(3) 		34.1
(-1.8) 		31.4
(-3) 		34.8
(-1.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 32.8
(-1.7)
P 		48.8
(0.8)
P 		24.3
(-3)
P 		25.7
(-2.8)
P 		47.1
(0.6)
P 		62.5
(3)
P 		38
B 25
(-3)
P 		36.1
(-1.9)
P 		27.7
(-2.7)
P 		33.4
(-2.2)
P 		56.9
(0.1)
P 		87.1
(3)
P 		62
C 44.6
(0)
P 		48.1
(0.6)
P 		49
(0.8)
P 		26.2
(-3)
P 		32.6
(-1.9)
P 		62.6
(3)
P 		36
avr 34.1
(-2.2) 		44.3
(-0.7) 		33.7
(-2.2) 		28.4
(-3) 		45.5
(-0.6) 		70.7
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172633_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11128
Sequence Type Exemplar sequence
Representative Public ID Y55H10B.1 NCBI
Target Description Y55H10B.1 /REP_DB=WormBase Gene ID /WP=CE22571 /TR=Q9N4R8 /GB=AAF60812.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074115(9), NM_067919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074115 NCBI Caenorhabditis elegans T16A9.1 (T16A9.1) mRNA, complete cds. 9/11 A 
NM_067919 NCBI Caenorhabditis elegans Y55H10B.1 (Y55H10B.1) mRNA, complete cds. 11/11 A 
SNAP00000034693 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3313613:3316753:1 11/11 None
GENEFINDER00000034695 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3313595:3316753:1 11/11 None
SNAP00000036503 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2904148:2908518:-1 9/11 None
GENEFINDER00000036619 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2904148:2908518:-1 9/11 None
SNAP00000032387 ENSEMBL cdna:SNAP chromosome:CEL140:V:14204241:14206640:-1 9/11 None
GENEFINDER00000032394 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14204241:14206640:-1 9/11 None
Y55H10B.1 ENSEMBL cdna:known chromosome:CEL140:IV:3314464:3317258:1 gene:Y55H10B.1 11/11 A 
T16A9.1 ENSEMBL cdna:known chromosome:CEL140:V:14204007:14206640:-1 gene:T16A9.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061031 8/11 Cross Hyb Matching Probes A 
NM_075057 7/11 Cross Hyb Matching Probes A 
SNAP00000038367 8/11 Cross Hyb Matching Probes None
GENEFINDER00000038392 8/11 Cross Hyb Matching Probes None
SNAP00000009855 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009867 6/11 Cross Hyb Matching Probes None
Y71A12B.7 8/11 Cross Hyb Matching Probes A 
F57G4.3 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl Y55H10B.1
T16A9.1
Entrez Gene 177100 Entrez gene
179923 Entrez gene
SwissProt Q22520 EMBL-EBI
Q9N4R8 EMBL-EBI
WormBase CE13720 Wormbase
CE22571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00875 Hypothetical protein T16A9.1 [Caenorhabditis elegans] ref|NP_506516.1| T16A9.1 [Caenorhabditis elegans] 0.0
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 0.0
blast AAF60812 Hypothetical protein Y55H10B.1 [Caenorhabditis elegans] ref|NP_500320.1| Y55H10B.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172633_X_AT
acggccaagacgattccgctaactcaagaactacactcaccgagagcgaaaacgaagtga
attttgacaatgaaaccacttcgctgttctcgcctcaaagcacattcacgcctatttttt
cgtcaacgcgcctcgaagagaggcaacttgtggaaagggagctcaaggacaaccatgccg
aagagaatcaactcgacgctgacaaggccgacgagagccagctcaacgacagtcgaaggt
cggctagaaatcgtaccagttcaacaattttcgacccgtcgccaactcaaccaaacgatg
atttcgaaatgtctccgagccatagactattgcgttttgacgaaatcattgatctgtggg
atatcgaactgtacaccaatacgactgagagcctcaccttcccggccacactgggaactg
agaacaattattctgtcagacctgataccggaactgtgttgaaaagccgcatattgaaaa
ttcgcctcctcaacgatgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCCAAGACGATTCCGCTAACTC 485 93 941 Antisense
GCTAACTCAAGAACTACACTCACCG 94 303 958 Antisense
ACAATGAAACCACTTCGCTGTTCTC 140 115 1007 Antisense
AAAGCACATTCACGCCTATTTTTTC 567 123 1037 Antisense
TTTTCGTCAACGCGCCTCGAAGAGA 447 667 1057 Antisense
GAGCTCAAGGACAACCATGCCGAAG 164 389 1099 Antisense
TCAACTCGACGCTGACAAGGCCGAC 372 627 1128 Antisense
GAGCCAGCTCAACGACAGTCGAAGG 323 385 1155 Antisense
CAGTTCAACAATTTTCGACCCGTCG 448 205 1197 Antisense
ACACCAATACGACTGAGAGCCTCAC 378 109 1313 Antisense
AAAATTCGCCTCCTCAACGATGATG 484 133 1417 Antisense
Sequence Source Affymetrix Proprietary Database