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[172630_x_at]

Description C35D10.11 /REP_DB=WormBase Gene ID /WP=CE01192 /TR=Q27317 /GB=AAA62567.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 98      4grp_total > 11      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 28.6
(-3)
A 		74.3
(0.4)
A 		71.8
(0.3)
A 		108.3
(3)
P 		80
B 71.9
(2.8)
P 		42.2
(-3)
A 		52.8
(-0.9)
A 		72.9
(3)
P 		31
C 66.8
(0.3)
A 		66
(0.2)
A 		29.6
(-3)
A 		96.9
(3)
P 		67
avr 55.8
(-2.4) 		60.8
(-1.6) 		51.4
(-3) 		92.7
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2218
1 2 3 4 5 6 range
A 74.4
(-2.9)
P 		46.1
(-3)
A 		133.2
(-2.8)
P 		248.4
(-2.4)
P 		1002.5
(-0.4)
P 		2234.7
(3)
P 		2189
B 24.2
(-3)
A 		34.3
(-2.9)
A 		17.1
(-3)
A 		198.9
(-2.2)
P 		1123.8
(1.8)
P 		1396.2
(3)
P 		1379
C 36.5
(-3)
A 		115
(-2.7)
P 		35.7
(-3)
A 		286.3
(-2)
P 		1345.6
(2.2)
P 		1560.7
(3)
P 		1525
avr 45
(-3) 		65.1
(-2.9) 		62
(-2.9) 		244.5
(-2.3) 		1157.3
(1) 		1730.5
(3) 		1686
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.4
(-3)
A 		16.1
(1.1)
A 		18.8
(3)
A 		15.8
(0.9)
P 		8
B 22.9
(3)
P 		10.4
(-3)
A 		12.2
(-2.1)
A 		15.5
(-0.6)
P 		13
C 22.1
(3)
A 		19
(1.4)
A 		10.3
(-3)
A 		16.3
(0.1)
P 		12
avr 18.5
(3) 		15.2
(-1.2) 		13.8
(-3) 		15.9
(-0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 540
1 2 3 4 5 6 range
A 13.7
(-3)
P 		16.4
(-3)
A 		29
(-2.8)
P 		63
(-2.4)
P 		302.5
(0.3)
P 		544.1
(3)
P 		530
B 8.4
(-3)
A 		11.4
(-2.9)
A 		4.1
(-3)
A 		52.7
(-2.4)
P 		456.6
(2.3)
P 		520.6
(3)
P 		517
C 13.5
(-2.9)
A 		35.1
(-2.7)
P 		9.1
(-3)
A 		57.6
(-2.4)
P 		435.4
(2)
P 		522.5
(3)
P 		513
avr 11.9
(-3) 		21
(-2.9) 		14.1
(-3) 		57.8
(-2.5) 		398.2
(1.5) 		529.1
(3) 		517
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172630_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7480
Sequence Type Exemplar sequence
Representative Public ID C35D10.11 NCBI
Target Description C35D10.11 /REP_DB=WormBase Gene ID /WP=CE01192 /TR=Q27317 /GB=AAA62567.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065614 NCBI Caenorhabditis elegans C35D10.11 (C35D10.11) mRNA, complete cds. 11/11 None
SNAP00000029549 ENSEMBL cdna:SNAP chromosome:CEL140:III:4868375:4868704:-1 11/11 None
GENEFINDER00000029561 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4868375:4868704:-1 11/11 None
C35D10.11 ENSEMBL cdna:known chromosome:CEL140:III:4868375:4868704:-1 gene:C35D10.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069410 2/11 Cross Hyb Matching Probes A B 
NM_069407 2/11 Cross Hyb Matching Probes A B 
NM_069412 2/11 Cross Hyb Matching Probes A B 
SNAP00000020512 2/11 Cross Hyb Matching Probes None
SNAP00000020515 2/11 Cross Hyb Matching Probes None
SNAP00000020518 2/11 Cross Hyb Matching Probes None
GENEFINDER00000020520 2/11 Cross Hyb Matching Probes None
GENEFINDER00000020526 2/11 Cross Hyb Matching Probes None
GENEFINDER00000020527 2/11 Cross Hyb Matching Probes None
F44D12.3 2/11 Cross Hyb Matching Probes A B 
F44D12.5 2/11 Cross Hyb Matching Probes A B 
F44D12.7 2/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10035615-10035943(+) 92.73 92.73
chrIV:10029060-10029388(+) 92.12 92.12
chrIII:4868374-4868704(-) 100.0 100.0
chrIV:10022328-10022656(-) 92.73 92.73
Public Domain and Genome References
Gene Title
Ensembl C35D10.11
Entrez Gene 175648 Entrez gene
SwissProt Q27317 EMBL-EBI
WormBase CE01192 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92603 Hypothetical protein F44D12.7 [Caenorhabditis elegans] emb|CAA92601.1| Hypothetical protein F44D12.5 [Caenorhabditis elegans] emb|CAA92599.1| Hypothetical protein F44D12.3 [Caenorhabditis elegans] ref|NP_501811.1| F44D12.5 [Caenorhabditis elegans] ref|NP_501813.1| F44D12.7 [Caenorhabditis elegans] ref|NP_501808.1| F44D12.3 [Caenorhabditis elegans] ref|NP_498015.1| C35D10.11 [Caenorhabditis elegans] gb|AAA62567.1| Hypothetical protein C35D10.11 [Caenorhabditis elegans] 7.0E-43
blast CAE59021 Hypothetical protein CBG02298 [Caenorhabditis briggsae] 1.0E-40
blast CAE73222 Hypothetical protein CBG20628 [Caenorhabditis briggsae] 6.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.7E-32
Sequence
Target Sequence 
>C. ELEGANS:172630_X_AT
cttccacccacaaacttgtcaatgctggagctgagaagatgatcttcaagatcaagtctt
caaacaacaacgagtaccgtatcacaccagtctttggattcgttgatccatccggatcca
aggacatcacaatcactcgtactgctggagcaccaaaagaagacaaactcgttgttcact
ttgctgctgctccagctgatgccactgatgctcaagctgcgtttgctgccattactccag
ctggaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCACCCACAAACTTGTCAATGC 283 219 65 Antisense
GTCTTCAAACAACAACGAGTACCGT 333 459 120 Antisense
ACCGTATCACACCAGTCTTTGGATT 2 89 140 Antisense
GTCTTTGGATTCGTTGATCCATCCG 462 469 154 Antisense
GATCCATCCGGATCCAAGGACATCA 412 415 169 Antisense
AAGGACATCACAATCACTCGTACTG 656 159 184 Antisense
TCACTCGTACTGCTGGAGCACCAAA 310 627 197 Antisense
ACAAACTCGTTGTTCACTTTGCTGC 20 113 227 Antisense
AGCTGATGCCACTGATGCTCAAGCT 187 81 258 Antisense
CTGATGCTCAAGCTGCGTTTGCTGC 81 239 269 Antisense
TGCTGCCATTACTCCAGCTGGAACC 49 583 288 Antisense
Sequence Source Affymetrix Proprietary Database