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[172628_x_at]

Description Y38E10A.16 /REP_DB=WormBase Gene ID /WP=CE21596 /TR=Q9NAJ5 /GB=CAB54407.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 32      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 30.9
(-1.2)
A 		20
(-2.4)
A 		67.7
(3)
A 		15
(-3)
A 		53
B 2.6
(-3)
A 		37
(0.1)
A 		69.6
(3)
A 		34.9
(-0.1)
A 		67
C 14.6
(-3)
A 		62.5
(0.6)
A 		42.8
(-0.9)
M 		93.4
(3)
A 		79
avr 16
(-3) 		39.8
(0.2) 		60
(3) 		47.8
(1.3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 181.7
(3)
P 		66.2
(-0.9)
P 		46.7
(-1.5)
A 		57.6
(-1.2)
A 		2.7
(-3)
A 		5.6
(-2.9)
A 		179
B 220.6
(3)
P 		61.7
(-1.4)
P 		20.6
(-2.5)
A 		4.2
(-3)
A 		26.9
(-2.4)
A 		13.3
(-2.7)
A 		216
C 302.7
(3)
P 		133.3
(-0.5)
M 		15.2
(-2.9)
A 		33.2
(-2.5)
A 		9.2
(-3)
A 		34.7
(-2.5)
A 		294
avr 235
(3) 		87.1
(-1) 		27.5
(-2.6) 		31.7
(-2.5) 		12.9
(-3) 		17.9
(-2.9) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.3
(0.5)
A 		4.3
(-2.2)
A 		17.7
(3)
A 		2.2
(-3)
A 		16
B 0.8
(-3)
A 		9.1
(0.3)
A 		16.1
(3)
A 		7.4
(-0.4)
A 		15
C 4.8
(-3)
A 		18
(3)
A 		14.9
(1.6)
M 		15.7
(2)
A 		13
avr 5.6
(-3) 		10.5
(-0.2) 		16.2
(3) 		8.4
(-1.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 33.5
(3)
P 		23.5
(1.2)
P 		10.2
(-1.3)
A 		14.6
(-0.5)
A 		0.8
(-3)
A 		1.4
(-2.9)
A 		33
B 76.8
(3)
P 		20.6
(-1.5)
P 		5
(-2.7)
A 		1.1
(-3)
A 		10.9
(-2.2)
A 		5
(-2.7)
A 		76
C 112.2
(3)
P 		40.7
(-0.9)
M 		3.9
(-3)
A 		6.7
(-2.8)
A 		3
(-3)
A 		11.6
(-2.5)
A 		109
avr 74.2
(3) 		28.3
(-1) 		6.4
(-2.9) 		7.5
(-2.8) 		4.9
(-3) 		6
(-2.9) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172628_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2927
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.16 NCBI
Target Description Y38E10A.16 /REP_DB=WormBase Gene ID /WP=CE21596 /TR=Q9NAJ5 /GB=CAB54407.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064298 NCBI Caenorhabditis elegans Y38E10A.16 (Y38E10A.16) mRNA, complete cds. 11/11 None
SNAP00000017442 ENSEMBL cdna:SNAP chromosome:CEL140:II:12628905:12629172:1 11/11 None
GENEFINDER00000017461 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12628905:12629172:1 11/11 None
Y38E10A.16 ENSEMBL cdna:known chromosome:CEL140:II:12628905:12629172:1 gene:Y38E10A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12628901-12629169(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.16
Entrez Gene 189662 Entrez gene
SwissProt Q9NAJ5 EMBL-EBI
WormBase CE21596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54407 Hypothetical protein Y38E10A.16 [Caenorhabditis elegans] ref|NP_496699.1| Y38E10A.16 [Caenorhabditis elegans] 4.0E-27
blast CAB54406 Hypothetical protein Y38E10A.15 [Caenorhabditis elegans] ref|NP_496698.1| Y38E10A.15 [Caenorhabditis elegans] 3.0E-22
blast CAE65373 Hypothetical protein CBG10318 [Caenorhabditis briggsae] emb|CAE56968.1| Hypothetical protein CBG24819 [Caenorhabditis briggsae] 1.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR009853 EMBL-EBI Protein of unknown function DUF1412 2.3E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496699.1 1 4-23
Y38E10A.16 1 4-23
SNAP00000017442 1 4-23
GENEFINDER00000017461 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:172628_X_AT
ttttccttactacggtatccgctggaatcatccgggaccgtcgtgcaattgaggactatt
ggtattcaaatggagttgttaacaatatggtgtcagacaacatttatggaggatccactt
ctcttggatgggcacaagttccacaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCTTACTACGGTATCCGCTGG 240 665 50 Antisense
CCTTACTACGGTATCCGCTGGAATC 632 267 54 Antisense
GTATCCGCTGGAATCATCCGGGACC 400 455 64 Antisense
AATCATCCGGGACCGTCGTGCAATT 353 171 75 Antisense
TCCGGGACCGTCGTGCAATTGAGGA 403 591 80 Antisense
GACCGTCGTGCAATTGAGGACTATT 215 383 85 Antisense
GAGGACTATTGGTATTCAAATGGAG 196 405 100 Antisense
ATGGTGTCAGACAACATTTATGGAG 94 51 136 Antisense
ATTTATGGAGGATCCACTTCTCTTG 639 15 151 Antisense
GGATCCACTTCTCTTGGATGGGCAC 22 513 160 Antisense
TGGATGGGCACAAGTTCCACACCAC 198 551 174 Antisense
Sequence Source Affymetrix Proprietary Database