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[172627_x_at]

Description Y105C5A.13 /REP_DB=WormBase Gene ID /WP=CE23193 /TR=Q9N678 /GB=CAB54992.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 22      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 07      6grp_total > 22      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11406
1 2 3 4 range
A 9568.8
(1.1)
P 		13049.5
(3)
P 		11269.3
(2)
P 		1930.5
(-3)
P 		11119
B 9718.3
(2.1)
P 		10471.1
(2.6)
P 		11086.9
(3)
P 		1643.9
(-3)
P 		9443
C 10143.4
(2.5)
P 		10934.6
(3)
P 		9306.9
(1.9)
P 		1671.9
(-3)
P 		9263
avr 9810.2
(2) 		11485.1
(3) 		10554.4
(2.4) 		1748.8
(-3) 		9736

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18905
1 2 3 4 5 6 range
A 23216
(3)
P 		15812.3
(0.7)
P 		19223.9
(1.7)
P 		12440.3
(-0.4)
P 		9342.4
(-1.4)
P 		4310.7
(-3)
P 		18905
B 14980.9
(1.4)
P 		18422.8
(3)
P 		16019.4
(1.9)
P 		13923.2
(1)
P 		9935.4
(-0.9)
P 		5244.4
(-3)
P 		13178
C 13397.8
(0.6)
P 		18999.9
(3)
P 		13191.9
(0.5)
P 		12592.8
(0.2)
P 		8193.9
(-1.6)
P 		5048.9
(-3)
P 		13951
avr 17198.2
(2.7) 		17745
(3) 		16145.1
(2.3) 		12985.4
(0.8) 		9157.2
(-1) 		4868
(-3) 		12877
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3202
1 2 3 4 range
A 3484
(3)
P 		2832.7
(1.8)
P 		2946
(2)
P 		282.6
(-3)
P 		3201
B 3099.1
(3)
P 		2586.1
(1.9)
P 		2569.1
(1.8)
P 		350.3
(-3)
P 		2749
C 3357.7
(3)
P 		3143.8
(2.6)
P 		3243.7
(2.8)
P 		281.9
(-3)
P 		3076
avr 3313.6
(3) 		2854.2
(2.1) 		2919.6
(2.2) 		304.9
(-3) 		3009

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5083
1 2 3 4 5 6 range
A 4279.7
(1.2)
P 		5623.6
(3)
P 		4186.6
(1.1)
P 		3155.1
(-0.2)
P 		2819.1
(-0.7)
P 		1049.5
(-3)
P 		4574
B 5212.6
(1.7)
P 		6132.2
(3)
P 		3890
(-0.2)
P 		3687.8
(-0.5)
P 		4036.6
(-0)
P 		1955.6
(-3)
P 		4177
C 4966
(1.8)
P 		5797.4
(3)
P 		3357.6
(-0.6)
P 		2532.4
(-1.8)
P 		2651.4
(-1.6)
P 		1690.2
(-3)
P 		4107
avr 4819.4
(1.6) 		5851.1
(3) 		3811.4
(0.1) 		3125.1
(-0.8) 		3169
(-0.8) 		1565.1
(-3) 		4286
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172627_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9658
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.13 NCBI
Target Description Y105C5A.13 /REP_DB=WormBase Gene ID /WP=CE23193 /TR=Q9N678 /GB=CAB54992.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070480(11), NM_070479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070480 NCBI Caenorhabditis elegans Y105C5A.13 (Y105C5A.13) mRNA, complete cds. 11/11 None
NM_070479 NCBI Caenorhabditis elegans Y105C5A.12 (Y105C5A.12) mRNA, complete cds. 11/11 None
SNAP00000033709 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15641474:15641751:-1 11/11 None
SNAP00000033710 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15643490:15643767:1 11/11 None
GENEFINDER00000033783 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15643490:15643767:1 11/11 None
GENEFINDER00000033790 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15641474:15641751:-1 11/11 None
Y105C5A.13 ENSEMBL cdna:known chromosome:CEL140:IV:15641177:15643790:1 gene:Y105C5A.13 11/11 None
Y105C5A.12 ENSEMBL cdna:known chromosome:CEL140:IV:15641474:15641751:-1 gene:Y105C5A.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061618 6/11 Cross Hyb Matching Probes A 
NM_061617 4/11 Cross Hyb Matching Probes A 
SNAP00000042056 4/11 Cross Hyb Matching Probes None
SNAP00000042057 6/11 Cross Hyb Matching Probes None
GENEFINDER00000042058 6/11 Cross Hyb Matching Probes None
GENEFINDER00000042062 4/11 Cross Hyb Matching Probes None
C08E3.13 4/11 Cross Hyb Matching Probes A 
C08E3.1 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1633807-1634082(+) 95.67 95.67
chrIV:15643495-15643773(+) 100.0 100.0
chrII:1632038-1632313(-) 94.37 94.37
chrIV:15641479-15641757(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y105C5A.13
Y105C5A.12
Entrez Gene 178441 Entrez gene
190877 Entrez gene
SwissProt Q7K702 EMBL-EBI
Q9N678 EMBL-EBI
WormBase CE23193 Wormbase
CE36217 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54992 Hypothetical protein Y105C5A.13 [Caenorhabditis elegans] ref|NP_502881.2| Y105C5A.13 [Caenorhabditis elegans] 2.0E-61
blast CAB54991 Hypothetical protein Y105C5A.12 [Caenorhabditis elegans] ref|NP_502880.1| Y105C5A.12 [Caenorhabditis elegans] 1.0E-39
blast CAB54992 Hypothetical protein Y105C5A.13 [Caenorhabditis elegans] ref|NP_502881.2| Y105C5A.13 [Caenorhabditis elegans] 1.0E-39
Sequence
Target Sequence 
>C. ELEGANS:172627_X_AT
ttcacagccaggaaccgtcggaaaagacatggccggagccctggccggtcggcacaacga
tatgcctccaatctcttcaaattaccagggacgtccgggaaatgcgaatcccaactatag
atatcaaccaagtgcagacaacgcacggaatgtggccgactggaccaaaagccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACAGCCAGGAACCGTCGGAAAA 709 683 30 Antisense
AAAAGACATGGCCGGAGCCCTGGCC 635 131 51 Antisense
CCTGGCCGGTCGGCACAACGATATG 149 267 69 Antisense
GGCACAACGATATGCCTCCAATCTC 60 535 80 Antisense
TGCCTCCAATCTCTTCAAATTACCA 41 587 92 Antisense
TCTTCAAATTACCAGGGACGTCCGG 549 599 103 Antisense
GGACGTCCGGGAAATGCGAATCCCA 67 465 118 Antisense
GCGAATCCCAACTATAGATATCAAC 107 289 133 Antisense
GATATCAACCAAGTGCAGACAACGC 430 425 149 Antisense
GACAACGCACGGAATGTGGCCGACT 391 365 166 Antisense
GTGGCCGACTGGACCAAAAGCCATA 70 493 181 Antisense
Sequence Source Affymetrix Proprietary Database