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[172626_at]

Description F07H5.4 /REP_DB=WormBase Gene ID /WP=CE09231 /TR=SW:Q19177 /GB=CAA92665.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 36      6grp_total > 03      4grp_total > 12      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4674
1 2 3 4 range
A 4324.3
(-0.8)
P 		3573.4
(-1.9)
P 		2765.9
(-3)
P 		7081.5
(3)
P 		4316
B 3900.1
(-0.7)
P 		3018.3
(-2)
P 		2407.8
(-3)
P 		6259.1
(3)
P 		3851
C 4245.2
(-0.8)
P 		3247
(-2.2)
P 		2708.9
(-3)
P 		6864.2
(3)
P 		4155
avr 4156.5
(-0.8) 		3279.6
(-2) 		2627.5
(-3) 		6734.9
(3) 		4107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2454
1 2 3 4 5 6 range
A 4842.3
(2.3)
P 		4430.1
(0.6)
P 		4831.6
(2.2)
P 		5027.5
(3)
P 		4091.4
(-0.8)
P 		3540.7
(-3)
P 		1487
B 4045.1
(0.9)
P 		4423.2
(2.5)
P 		3089.9
(-3)
P 		4541.7
(3)
P 		3997.1
(0.7)
P 		3445.5
(-1.5)
P 		1452
C 4292.3
(2.7)
P 		4244.3
(2.5)
P 		4167
(2.2)
P 		4398.4
(3)
P 		3743.4
(0.8)
P 		2573.5
(-3)
P 		1825
avr 4393.2
(1.9) 		4365.9
(1.8) 		4029.5
(0.4) 		4655.9
(3) 		3944
(0.1) 		3186.6
(-3) 		1469
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1017
1 2 3 4 range
A 1574.5
(3)
P 		775.7
(-2.6)
P 		723.1
(-3)
P 		1036.6
(-0.8)
P 		851
B 1243.7
(2.3)
P 		745.5
(-1.5)
P 		558
(-3)
P 		1333.8
(3)
P 		776
C 1405.3
(3)
P 		933.5
(-3)
P 		944.1
(-2.9)
P 		1157.4
(-0.2)
P 		472
avr 1407.8
(3) 		818.2
(-2.3) 		741.7
(-3) 		1175.9
(0.9) 		666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 874
1 2 3 4 5 6 range
A 892.6
(-2.7)
P 		1575.6
(3)
P 		1052.2
(-1.4)
P 		1275.1
(0.5)
P 		1234.6
(0.1)
P 		862
(-3)
P 		714
B 1407.5
(1.5)
P 		1472.3
(2)
P 		750.3
(-3)
P 		1202.9
(0.1)
P 		1624
(3)
P 		1284.8
(0.7)
P 		874
C 1591
(3)
P 		1295.1
(0.6)
P 		1060.6
(-1.4)
P 		884.5
(-2.8)
P 		1211.3
(-0.1)
P 		861.5
(-3)
P 		730
avr 1297
(1.2) 		1447.7
(3) 		954.4
(-3) 		1120.8
(-1) 		1356.6
(1.9) 		1002.8
(-2.4) 		493
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3912
Sequence Type Exemplar sequence
Representative Public ID F07H5.4 NCBI
Target Description F07H5.4 /REP_DB=WormBase Gene ID /WP=CE09231 /TR=SW:Q19177 /GB=CAA92665.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F07H5.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F07H5.4 F07H5.4 /REP_DB=WormBase Gene ID /WP=CE09231 /TR=SW:Q19177 /GB=CAA92665.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8786371-8786485(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172626_AT
gtatctagatgatccatcttctatagattacctcatctcagttgatgatcacctcgccgc
cgtatctatcaagccactaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCTAGATGATCCATCTTCTATA 536 453 15 Antisense
GATGATCCATCTTCTATAGATTACC 366 411 22 Antisense
GATCCATCTTCTATAGATTACCTCA 45 417 25 Antisense
CATCTTCTATAGATTACCTCATCTC 473 213 29 Antisense
TCTTCTATAGATTACCTCATCTCAG 479 617 31 Antisense
TCTATAGATTACCTCATCTCAGTTG 141 615 34 Antisense
TATAGATTACCTCATCTCAGTTGAT 173 661 36 Antisense
GATTACCTCATCTCAGTTGATGATC 587 429 40 Antisense
ACCTCATCTCAGTTGATGATCACCT 637 87 44 Antisense
CATCTCAGTTGATGATCACCTCGCC 269 213 48 Antisense
CGCCGTATCTATCAAGCCACTAAAG 687 255 72 Antisense
Sequence Source Affymetrix Proprietary Database