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[172625_x_at]

Description B0464.3 /REP_DB=WormBase Gene ID /WP=CE00017 /TR=SW:Q03561 /GB=CAA79537.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 67      6grp_total > 21      4grp_total > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1214
1 2 3 4 range
A 1993.5
(1.3)
P 		1685.9
(-0.8)
P 		2243.8
(3)
P 		1363.9
(-3)
P 		880
B 1710.9
(-1.9)
P 		2073.7
(0.1)
P 		2578.2
(3)
P 		1516.1
(-3)
P 		1062
C 2161.4
(3)
P 		1930.2
(-0.2)
P 		2062.4
(1.6)
P 		1730
(-3)
P 		431
avr 1955.3
(0.3) 		1896.6
(-0.2) 		2294.8
(3) 		1536.7
(-3) 		758

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 958
1 2 3 4 5 6 range
A 1619.5
(-1.9)
P 		1922.9
(-0)
P 		2406.4
(3)
P 		1602.6
(-2)
P 		1465.3
(-2.9)
P 		1448.4
(-3)
P 		958
B 1551.2
(-2.8)
P 		1820.1
(-0.5)
P 		2236.3
(3)
P 		1566.4
(-2.6)
P 		1691.6
(-1.6)
P 		1521.7
(-3)
P 		715
C 1768.1
(-0.3)
P 		1961.6
(3)
P 		1722.3
(-1)
P 		1716.3
(-1.1)
P 		1656.4
(-2.1)
P 		1605.3
(-3)
P 		356
avr 1646.3
(-1.8) 		1901.5
(0.8) 		2121.7
(3) 		1628.4
(-2) 		1604.4
(-2.2) 		1525.1
(-3) 		597
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 526
1 2 3 4 range
A 725.8
(3)
P 		366
(-1.1)
P 		586.6
(1.4)
P 		199.6
(-3)
P 		526
B 545.6
(1.9)
P 		512.2
(1.1)
P 		597.4
(3)
P 		323.1
(-3)
P 		274
C 715.5
(3)
P 		554.9
(0.7)
P 		718.8
(3)
P 		291.7
(-3)
P 		427
avr 662.3
(3) 		477.7
(0.2) 		634.3
(2.6) 		271.5
(-3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 298.5
(-3)
P 		683.9
(3)
P 		524.1
(0.5)
P 		406.4
(-1.3)
P 		442.2
(-0.8)
P 		352.6
(-2.2)
P 		385
B 539.8
(-0.2)
P 		605.8
(1.2)
P 		543
(-0.2)
P 		414.9
(-3)
P 		687.3
(3)
P 		567.4
(0.4)
P 		272
C 655.3
(3)
P 		598.6
(1.9)
P 		438.4
(-1.2)
P 		345.1
(-3)
P 		536
(0.7)
P 		537.4
(0.7)
P 		310
avr 497.9
(-0.3) 		629.4
(3) 		501.8
(-0.2) 		388.8
(-3) 		555.2
(1.1) 		485.8
(-0.6) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172625_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6985
Sequence Type Exemplar sequence
Representative Public ID B0464.3 NCBI
Target Description B0464.3 /REP_DB=WormBase Gene ID /WP=CE00017 /TR=SW:Q03561 /GB=CAA79537.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066687 NCBI Caenorhabditis elegans B0464.3 (B0464.3) mRNA, complete cds. 11/11 None
SNAP00000014949 ENSEMBL cdna:SNAP chromosome:CEL140:III:9488629:9488981:1 11/11 None
GENEFINDER00000014956 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9488629:9488981:1 11/11 None
B0464.3.2 ENSEMBL cdna:known chromosome:CEL140:III:9488625:9489077:1 gene:B0464.3 11/11 None
B0464.3.1 ENSEMBL cdna:known chromosome:CEL140:III:9488627:9489086:1 gene:B0464.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9488624-9488977(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0464.3
Entrez Gene 176333 Entrez gene
SwissProt Q03561 EMBL-EBI
WormBase CE00017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79537 Hypothetical protein B0464.3 [Caenorhabditis elegans] ref|NP_499088.1| B0464.3 [Caenorhabditis elegans] sp|Q03561|YKD3_CAEEL Hypothetical protein B0464.3 in chromosome III 1.0E-41
blast CAE65202 Hypothetical protein CBG10077 [Caenorhabditis briggsae] 6.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499088.1 1 15-37
B0464.3.2 1 15-37
B0464.3.1 1 15-37
SNAP00000014949 1 15-37
GENEFINDER00000014956 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:172625_X_AT
atgtccgtcgacttgaagcaacaattggagcttgctgattacttgggagcactcgctgtt
tggtgcatcttcttcggagtcctcttcattctcagcgtcatcttcaacttcgtctgcatt
aaaaaggacgatgacgtcactgctcttgagagatggggctacaagaagaacatcgacatg
aagcttggtccccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCGTCGACTTGAAGCAACAAT 371 49 13 Antisense
GAAGCAACAATTGGAGCTTGCTGAT 295 341 27 Antisense
TTGGAGCTTGCTGATTACTTGGGAG 373 683 37 Antisense
GATTACTTGGGAGCACTCGCTGTTT 640 423 49 Antisense
AGCACTCGCTGTTTGGTGCATCTTC 276 77 60 Antisense
TCATCTTCAACTTCGTCTGCATTAA 68 621 110 Antisense
TCAACTTCGTCTGCATTAAAAAGGA 109 629 116 Antisense
AGGACGATGACGTCACTGCTCTTGA 287 55 137 Antisense
CTGCTCTTGAGAGATGGGGCTACAA 605 237 152 Antisense
GGGGCTACAAGAAGAACATCGACAT 119 499 167 Antisense
CATCGACATGAAGCTTGGTCCCCAT 606 211 183 Antisense
Sequence Source Affymetrix Proprietary Database