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[172624_x_at]

Description Y38E10A.12 /REP_DB=WormBase Gene ID /WP=CE21592 /TR=Q9NAJ9 /GB=CAB54403.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 02      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 3.5
(-3)
A 		9.9
(-2.5)
A 		3
(-3)
A 		82.2
(3)
A 		79
B 5.9
(-2.8)
A 		7
(-2.7)
A 		4
(-3)
A 		68.4
(3)
A 		64
C 3.4
(-2.9)
A 		2.2
(-3)
A 		7.2
(-2.5)
A 		57.7
(3)
A 		56
avr 4.3
(-3) 		6.4
(-2.8) 		4.7
(-3) 		69.4
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 32.5
(3)
A 		5.8
(-2.4)
A 		2.7
(-3)
A 		6.2
(-2.3)
A 		3.8
(-2.8)
A 		12.1
(-1.1)
A 		30
B 103
(3)
A 		3.1
(-3)
A 		7.1
(-2.8)
A 		3.6
(-3)
A 		4.5
(-2.9)
A 		40.7
(-0.7)
A 		100
C 84.3
(3)
A 		9.9
(-2.4)
A 		8
(-2.6)
A 		3.7
(-2.9)
A 		1.9
(-3)
A 		19.3
(-1.7)
A 		82
avr 73.3
(3) 		6.3
(-2.8) 		5.9
(-2.8) 		4.5
(-2.9) 		3.4
(-3) 		24
(-1.2) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.3
(-2.7)
A 		2.1
(-2.3)
A 		0.8
(-3)
A 		12
(3)
A 		11
B 1.9
(-2.6)
A 		1.7
(-2.6)
A 		0.9
(-3)
A 		14.6
(3)
A 		14
C 1.1
(-2.7)
A 		0.6
(-3)
A 		2.5
(-1.7)
A 		9.7
(3)
A 		9
avr 1.4
(-3) 		1.5
(-2.9) 		1.4
(-3) 		12.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6
(3)
A 		2.1
(-1.3)
A 		0.6
(-3)
A 		1.6
(-1.9)
A 		1.2
(-2.3)
A 		2.9
(-0.4)
A 		5
B 35.8
(3)
A 		1
(-3)
A 		1.7
(-2.9)
A 		1
(-3)
A 		1.8
(-2.9)
A 		15.2
(-0.6)
A 		35
C 31.3
(3)
A 		3
(-2.5)
A 		2
(-2.7)
A 		0.7
(-3)
A 		0.6
(-3)
A 		6.5
(-1.8)
A 		31
avr 24.4
(3) 		2
(-2.8) 		1.4
(-2.9) 		1.1
(-3) 		1.2
(-3) 		8.2
(-1.2) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172624_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3813
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.12 NCBI
Target Description Y38E10A.12 /REP_DB=WormBase Gene ID /WP=CE21592 /TR=Q9NAJ9 /GB=CAB54403.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064294 NCBI Caenorhabditis elegans Y38E10A.12 (Y38E10A.12) mRNA, complete cds. 11/11 None
SNAP00000017437 ENSEMBL cdna:SNAP chromosome:CEL140:II:12617798:12618067:1 11/11 None
GENEFINDER00000017452 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12617798:12618067:1 11/11 None
Y38E10A.12 ENSEMBL cdna:known chromosome:CEL140:II:12617798:12618067:1 gene:Y38E10A.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027255 1/11 Cross Hyb Matching Probes None
NM_064295 1/11 Cross Hyb Matching Probes A 
SNAP00000017438 1/11 Cross Hyb Matching Probes None
SNAP00000017439 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017466 1/11 Cross Hyb Matching Probes None
Y38E10A.26 1/11 Cross Hyb Matching Probes None
Y38E10A.13 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12617794-12618064(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.12
Entrez Gene 189659 Entrez gene
SwissProt Q9NAJ9 EMBL-EBI
WormBase CE21592 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54403 Hypothetical protein Y38E10A.12 [Caenorhabditis elegans] ref|NP_496695.1| Y38E10A.12 [Caenorhabditis elegans] 1.0E-27
blast CAE17994 Hypothetical protein Y38E10A.26 [Caenorhabditis elegans] ref|NP_001022426.1| Y38E10A.26 [Caenorhabditis elegans] 2.0E-23
blast CAB54404 Hypothetical protein Y38E10A.13 [Caenorhabditis elegans] ref|NP_496696.1| Y38E10A.13 [Caenorhabditis elegans] 2.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR009853 EMBL-EBI Protein of unknown function DUF1412 2.0E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496695.1 1 5-23
Y38E10A.12 1 5-23
SNAP00000017437 1 5-23
GENEFINDER00000017452 1 5-23
Sequence
Target Sequence 
>C. ELEGANS:172624_X_AT
atgtctccaaaatttctattcttcattgtcctcgccctcttcctcgctacagtatccgct
ggaattattcgtgagcggcgtcaagcttactacaccccgaatggtgcagttgttaacaat
atggtcagcgatggcttgtttggaggacccacgtctcttggatgggctcaagttccacac
gtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCCAAAATTTCTATTCTTCA 609 47 13 Antisense
AAATTTCTATTCTTCATTGTCCTCG 67 117 22 Antisense
TTCCTCGCTACAGTATCCGCTGGAA 651 699 52 Antisense
GTATCCGCTGGAATTATTCGTGAGC 401 455 64 Antisense
ATTCGTGAGCGGCGTCAAGCTTACT 530 7 79 Antisense
CAAGCTTACTACACCCCGAATGGTG 176 137 94 Antisense
ACCCCGAATGGTGCAGTTGTTAACA 24 89 106 Antisense
TTAACAATATGGTCAGCGATGGCTT 633 679 125 Antisense
GATGGCTTGTTTGGAGGACCCACGT 689 405 142 Antisense
GACCCACGTCTCTTGGATGGGCTCA 261 381 158 Antisense
TGGATGGGCTCAAGTTCCACACGTC 199 551 171 Antisense
Sequence Source Affymetrix Proprietary Database