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[172623_at]

Description Y105C5A.10 /REP_DB=WormBase Gene ID /WP=CE23191 /TR=Q9NF66 /GB=CAB54989.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 14.5
(-1.8)
A 		2.2
(-3)
A 		7.5
(-2.5)
A 		61.9
(3)
P 		60
B 1.9
(-3)
A 		14.6
(3)
A 		12.2
(1.9)
A 		14.6
(3)
A 		13
C 3.1
(-2.9)
A 		8.7
(-2)
A 		2.7
(-3)
A 		37.9
(3)
A 		35
avr 6.5
(-3) 		8.5
(-2.6) 		7.5
(-2.8) 		38.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 20
(1.7)
A 		12.4
(-0.4)
A 		15.4
(0.4)
A 		3.1
(-3)
A 		24.6
(3)
A 		5.1
(-2.4)
A 		22
B 11
(3)
A 		3.5
(-1.3)
A 		8.4
(1.5)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		1.5
(-2.4)
A 		11
C 16.1
(0.6)
P 		11
(-0.6)
A 		14.4
(0.2)
A 		25.8
(3)
A 		1.9
(-2.9)
A 		1.4
(-3)
A 		24
avr 15.7
(3) 		9
(-0.1) 		12.7
(1.6) 		9.9
(0.3) 		9
(-0.1) 		2.7
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.3
(0.3)
A 		0.5
(-3)
A 		2
(-2)
A 		9.1
(3)
P 		9
B 0.6
(-3)
A 		3.6
(3)
A 		2.8
(1.4)
A 		3.1
(2)
A 		3
C 1
(-2.9)
A 		2.5
(-1.3)
A 		0.9
(-3)
A 		6.4
(3)
A 		6
avr 2.3
(-2.4) 		2.2
(-2.6) 		1.9
(-3) 		6.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.7
(-0.4)
A 		4.4
(0.3)
A 		3.4
(-0.6)
A 		0.8
(-3)
A 		7.4
(3)
A 		1.2
(-2.6)
A 		7
B 3.8
(3)
A 		1.2
(-1.3)
A 		2
(0)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.6
(-2.3)
A 		4
C 6
(3)
P 		3.4
(0.2)
A 		3.7
(0.5)
A 		5.2
(2.1)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		6
avr 4.5
(3) 		3
(0.6) 		3
(0.6) 		2.1
(-0.9) 		2.7
(0.1) 		0.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9082
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.10 NCBI
Target Description Y105C5A.10 /REP_DB=WormBase Gene ID /WP=CE23191 /TR=Q9NF66 /GB=CAB54989.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070477 NCBI Caenorhabditis elegans Y105C5A.10 (Y105C5A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000033788 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15635724:15635909:1 11/11 None
Y105C5A.10 ENSEMBL cdna:known chromosome:CEL140:IV:15635724:15635909:1 gene:Y105C5A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15635729-15635915(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.10
Entrez Gene 190875 Entrez gene
SwissProt Q9NF66 EMBL-EBI
WormBase CE23191 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54989 Hypothetical protein Y105C5A.10 [Caenorhabditis elegans] ref|NP_502878.1| Y105C5A.10 [Caenorhabditis elegans] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:172623_AT
cgtctcccagaatctgcactacaaaagtctctgaaacatatgagcctagcggaacattta
tctctatcatttcgtgtcgaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCTCCCAGAATCTGCACTACAAA 589 245 40 Antisense
TCCCAGAATCTGCACTACAAAAGTC 658 597 44 Antisense
GAATCTGCACTACAAAAGTCTCTGA 243 327 49 Antisense
CTGCACTACAAAAGTCTCTGAAACA 702 235 53 Antisense
TCTGAAACATATGAGCCTAGCGGAA 240 607 69 Antisense
GAGCCTAGCGGAACATTTATCTCTA 510 385 81 Antisense
AGCGGAACATTTATCTCTATCATTT 643 79 87 Antisense
GGAACATTTATCTCTATCATTTCGT 462 529 90 Antisense
CATTTATCTCTATCATTTCGTGTCG 514 215 94 Antisense
TTATCTCTATCATTTCGTGTCGAAC 154 681 97 Antisense
ATCTCTATCATTTCGTGTCGAACAA 323 33 99 Antisense
Sequence Source Affymetrix Proprietary Database