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[172622_x_at]

Description Y116F11A.5 /REP_DB=WormBase Gene ID /WP=CE25209 /TR=Q9U3T1 /GB=CAB60763.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 63      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 72      6grp_total > 64      4grp_total > 09      6grp_high1_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1934
1 2 3 4 range
A 70.7
(-3)
P 		179.3
(-2.7)
P 		173.7
(-2.7)
P 		1983.5
(3)
P 		1913
B 74.4
(-3)
P 		208.4
(-1.9)
P 		151.4
(-2.4)
P 		799.3
(3)
P 		725
C 49.8
(-3)
P 		209.2
(-2)
P 		370.3
(-1)
P 		1004.7
(3)
P 		955
avr 65
(-3) 		199
(-2.3) 		231.8
(-2.2) 		1262.5
(3) 		1198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 615
1 2 3 4 5 6 range
A 129.3
(-3)
P 		367
(-0.7)
P 		744.6
(3)
P 		355.2
(-0.8)
P 		282.5
(-1.5)
P 		439.2
(0)
P 		615
B 174.7
(-3)
P 		249.9
(-1.6)
P 		461.6
(2.2)
P 		507.9
(3)
P 		264.5
(-1.4)
P 		423.6
(1.5)
P 		333
C 153.8
(-3)
P 		211.9
(-2.2)
P 		588.1
(3)
P 		428.8
(0.8)
P 		367.4
(-0)
P 		403.4
(0.4)
P 		434
avr 152.6
(-3) 		276.3
(-1.3) 		598.1
(3) 		430.6
(0.7) 		304.8
(-1) 		422.1
(0.6) 		446
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 25.7
(-3)
P 		38.9
(-2.7)
P 		45.4
(-2.6)
P 		290.4
(3)
P 		265
B 23.7
(-3)
P 		51.5
(-1.9)
P 		35.1
(-2.5)
P 		170.3
(3)
P 		147
C 16.5
(-3)
P 		60.2
(-1.3)
P 		129.1
(1.4)
P 		169.4
(3)
P 		153
avr 22
(-3) 		50.2
(-2.1) 		69.9
(-1.5) 		210
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 23.8
(-3)
P 		130.5
(1.6)
P 		162.2
(3)
P 		90.1
(-0.1)
P 		85.3
(-0.3)
P 		106.9
(0.6)
P 		138
B 60.8
(-3)
P 		83.2
(-1.6)
P 		112.1
(0.2)
P 		134.5
(1.6)
P 		107.5
(-0.1)
P 		157.9
(3)
P 		97
C 57
(-3)
P 		64.7
(-2.5)
P 		149.7
(3)
P 		86.2
(-1.1)
P 		118.9
(1)
P 		135
(2)
P 		93
avr 47.2
(-3) 		92.8
(-0.1) 		141.3
(3) 		103.6
(0.6) 		103.9
(0.6) 		133.3
(2.5) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172622_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13335
Sequence Type Exemplar sequence
Representative Public ID Y116F11A.5 NCBI
Target Description Y116F11A.5 /REP_DB=WormBase Gene ID /WP=CE25209 /TR=Q9U3T1 /GB=CAB60763.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075421 NCBI Caenorhabditis elegans Y116F11A.5 (Y116F11A.5) mRNA, complete cds. 11/11 None
SNAP00000017814 ENSEMBL cdna:SNAP chromosome:CEL140:V:19733162:19733371:-1 11/11 None
GENEFINDER00000017815 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19733162:19733357:-1 9/11 None
Y116F11A.5 ENSEMBL cdna:known chromosome:CEL140:V:19733162:19733371:-1 gene:Y116F11A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19733161-19733371(-) 100.0 100.0
chrV:18209755-18209960(-) 93.21 93.21
Public Domain and Genome References
Gene Title
Ensembl Y116F11A.5
Entrez Gene 191012 Entrez gene
SwissProt Q9U3T1 EMBL-EBI
WormBase CE25209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60763 Hypothetical protein Y116F11A.5 [Caenorhabditis elegans] ref|NP_507822.1| Y116F11A.5 [Caenorhabditis elegans] 2.0E-25
blast CAB60763 Hypothetical protein Y116F11A.5 [Caenorhabditis elegans] ref|NP_507822.1| Y116F11A.5 [Caenorhabditis elegans] 5.0E-22
blast CAB04125 Hypothetical protein F16H6.7 [Caenorhabditis elegans] ref|NP_507562.1| F16H6.7 [Caenorhabditis elegans] 3.0E-19
blast AAF99932 Hypothetical protein F35F10.7 [Caenorhabditis elegans] ref|NP_503909.1| F35F10.7 [Caenorhabditis elegans] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:172622_X_AT
ttatttcagaaatctcgacggttacacctttttcagttttatgaagcagaaacctcgtag
aaacttgttcattggagttccacctttggaaggtacatgcacaaaagaggtcgttcacga
ggctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTCAGAAATCTCGACGGTTAC 361 675 18 Antisense
TCAGAAATCTCGACGGTTACACCTT 571 619 23 Antisense
TCTCGACGGTTACACCTTTTTCAGT 641 609 30 Antisense
TACACCTTTTTCAGTTTTATGAAGC 222 643 40 Antisense
TTTATGAAGCAGAAACCTCGTAGAA 156 675 55 Antisense
GAAACCTCGTAGAAACTTGTTCATT 274 359 66 Antisense
GAAACTTGTTCATTGGAGTTCCACC 187 357 77 Antisense
GTTCATTGGAGTTCCACCTTTGGAA 661 443 84 Antisense
GTTCCACCTTTGGAAGGTACATGCA 248 439 94 Antisense
GGTACATGCACAAAAGAGGTCGTTC 227 505 109 Antisense
AAAAGAGGTCGTTCACGAGGCTATT 251 129 120 Antisense
Sequence Source Affymetrix Proprietary Database