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[172620_x_at]

Description Y105C5B.12 /REP_DB=WormBase Gene ID /WP=CE24061 /TR=Q9U311 /GB=CAB60317.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 10      4grp_high_8_8 > 63      6grp_highest_nonorm > 67      6grp_total > 02      4grp_total > 56      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3189
1 2 3 4 range
A 2024.2
(-2.8)
P 		3781.7
(0.9)
P 		4800.7
(3)
P 		1949.9
(-3)
P 		2851
B 2126
(-1.7)
P 		2912.5
(0.2)
P 		4054
(3)
P 		1612.1
(-3)
P 		2442
C 2204.4
(-2.2)
P 		3081.8
(0.2)
P 		4156.9
(3)
P 		1884.6
(-3)
P 		2272
avr 2118.2
(-2.3) 		3258.7
(0.4) 		4337.2
(3) 		1815.5
(-3) 		2522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1315
1 2 3 4 5 6 range
A 1876.7
(0.9)
P 		2345
(3)
P 		1029.8
(-3)
P 		1699.4
(0.1)
P 		1417.1
(-1.2)
P 		1596.9
(-0.4)
P 		1315
B 1814
(0.1)
P 		2194.2
(3)
P 		1426.8
(-2.9)
P 		1918.2
(0.9)
P 		1413.7
(-3)
P 		1433.7
(-2.8)
P 		781
C 1955.6
(1.6)
P 		2122.8
(3)
P 		1967.4
(1.7)
P 		1514.2
(-2.2)
P 		1598.7
(-1.5)
P 		1424.6
(-3)
P 		698
avr 1882.1
(0.3) 		2220.7
(3) 		1474.7
(-3) 		1710.6
(-1.1) 		1476.5
(-3) 		1485.1
(-2.9) 		746
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1163
1 2 3 4 range
A 737
(-0.2)
P 		820.9
(0.3)
P 		1255
(3)
P 		285.4
(-3)
P 		970
B 678
(0.4)
P 		719.3
(0.8)
P 		939.4
(3)
P 		343.5
(-3)
P 		596
C 729.7
(-0.8)
P 		886
(0)
P 		1448.8
(3)
P 		317.8
(-3)
P 		1131
avr 714.9
(-0.3) 		808.7
(0.3) 		1214.4
(3) 		315.6
(-3) 		899

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 610
1 2 3 4 5 6 range
A 345.9
(-1.8)
P 		834
(3)
P 		224.3
(-3)
P 		431
(-1)
P 		427.6
(-1)
P 		388.8
(-1.4)
P 		610
B 631.2
(1.4)
P 		730.4
(3)
P 		346.5
(-3)
P 		508.1
(-0.5)
P 		574.4
(0.6)
P 		534.6
(-0.1)
P 		384
C 724.9
(3)
P 		647.7
(1.9)
P 		500.7
(-0.2)
P 		304.5
(-3)
P 		517.3
(0)
P 		476.9
(-0.5)
P 		420
avr 567.3
(0.3) 		737.4
(3) 		357.2
(-3) 		414.5
(-2.1) 		506.4
(-0.6) 		466.8
(-1.3) 		380
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172620_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9593
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.12 NCBI
Target Description Y105C5B.12 /REP_DB=WormBase Gene ID /WP=CE24061 /TR=Q9U311 /GB=CAB60317.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182283(11), NM_070500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182283 NCBI Caenorhabditis elegans Y105C5B.12b (Y105C5B.12) mRNA, complete cds. 11/11 A 
NM_070500 NCBI Caenorhabditis elegans Y105C5B.12a (Y105C5B.12) mRNA, complete cds. 11/11 A 
SNAP00000018396 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15942497:15943751:-1 11/11 None
GENEFINDER00000018426 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15942497:15944392:-1 11/11 None
Y105C5B.12b ENSEMBL cdna:known chromosome:CEL140:IV:15942223:15944416:-1 gene:Y105C5B.12 11/11 A 
Y105C5B.12a ENSEMBL cdna:known chromosome:CEL140:IV:15942497:15944153:-1 gene:Y105C5B.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182286 2/11 Cross Hyb Matching Probes A 
NM_068470 2/11 Cross Hyb Matching Probes A 
NM_068471 6/11 Cross Hyb Matching Probes A 
NM_171354 1/11 Cross Hyb Matching Probes A 
NM_171355 1/11 Cross Hyb Matching Probes A 
NM_077601 1/11 Cross Hyb Matching Probes A 
SNAP00000039096 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039103 1/11 Cross Hyb Matching Probes None
SNAP00000039816 2/11 Cross Hyb Matching Probes None
SNAP00000039817 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039827 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039828 6/11 Cross Hyb Matching Probes None
SNAP00000033505 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033516 1/11 Cross Hyb Matching Probes None
C06E7.3b.1 2/11 Cross Hyb Matching Probes A 
C06E7.3b.2 2/11 Cross Hyb Matching Probes A 
C06E7.3b.3 2/11 Cross Hyb Matching Probes A 
C06E7.3a 2/11 Cross Hyb Matching Probes A 
C06E7.1a 6/11 Cross Hyb Matching Probes A 
T13A10.11a.1 1/11 Cross Hyb Matching Probes A 
T13A10.11a.2 1/11 Cross Hyb Matching Probes A 
T13A10.11b 1/11 Cross Hyb Matching Probes A 
C49F5.1.1 1/11 Cross Hyb Matching Probes A 
C49F5.1.2 1/11 Cross Hyb Matching Probes A 
C49F5.1.3 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5848678-5850588(+) 97.76 97.76
chrIV:15942502-15944398(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y105C5B.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54357 Hypothetical protein Y105C5B.12b [Caenorhabditis elegans] ref|NP_872083.1| Y105C5B.12b [Caenorhabditis elegans] 0.0
blast AAA82280 Hypothetical protein C06E7.1a [Caenorhabditis elegans] ref|NP_500872.1| C06E7.1a [Caenorhabditis elegans] sp|P50305|METK_CAEEL Probable S-adenosylmethionine synthetase C06E7.1 (Methionine adenosyltransferase) (AdoMet synthetase) 0.0
blast CAD56249 Hypothetical protein Y105C5B.12a [Caenorhabditis elegans] ref|NP_502901.2| Y105C5B.12a [Caenorhabditis elegans] 0.0
blast AAA82279 Hypothetical protein C06E7.3a [Caenorhabditis elegans] ref|NP_500871.1| C06E7.3a [Caenorhabditis elegans] sp|P50306|METL_CAEEL Probable S-adenosylmethionine synthetase C06E7.3 (Methionine adenosyltransferase) (AdoMet synthetase) 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 9.9E-27
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.5E-7
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 4.4E-99
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.6E-92
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 4.3E-9
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 4.4E-99
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.6E-92
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.3E-25
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 4.4E-99
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.6E-92
Sequence
Target Sequence 
>C. ELEGANS:172620_X_AT
agcagtgattcctgccaatctcatcgacgacaaaactatctaccatctcaatccatgtgg
atcgttcattattggaggaccaatgggagatgctggacttactggacgtaagatcatcgt
tgacacctacggaggatggggagctcacggaggaggtgctttctctggaaaagaccccac
caaagtcgatcgttctgccgcttatgctgctcgttgggttgccaagtcactggtcaaatc
aggactctgtcgccgttgtcttgttcaagtatcttatgcaatcggagtagccaaaccact
ttcagtgatggtgttctctttcggaacatctgcgttgaacgaaggagaactattgaaaat
tgtcaatgacaactttgatttgcgacctggaatgattattaaggatctcgatttgaagaa
accaatttatgaaccaaccgctgagaacggacactttggacacaatgaattcccatggga
gcagccacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTGATTCCTGCCAATCTCATC 227 77 606 Antisense
AACTATCTACCATCTCAATCCATGT 307 139 639 Antisense
GGAGATGCTGGACTTACTGGACGTA 212 517 691 Antisense
GATCATCGTTGACACCTACGGAGGA 80 421 717 Antisense
GCTCACGGAGGAGGTGCTTTCTCTG 489 301 748 Antisense
GTTGGGTTGCCAAGTCACTGGTCAA 495 435 818 Antisense
TCAAATCAGGACTCTGTCGCCGTTG 499 627 839 Antisense
GTCGCCGTTGTCTTGTTCAAGTATC 567 475 854 Antisense
CGGAGTAGCCAAACCACTTTCAGTG 162 243 888 Antisense
TTCAGTGATGGTGTTCTCTTTCGGA 327 687 906 Antisense
GAATTCCCATGGGAGCAGCCACGTC 656 323 1072 Antisense
Sequence Source Affymetrix Proprietary Database