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[172619_x_at]

Description C33F10.10 /REP_DB=WormBase Gene ID /WP=CE04142 /TR=Q18387 /GB=AAK31478.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 18      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.6
(-1)
A 		7.5
(-3)
A 		11.5
(-1.4)
A 		22.5
(3)
A 		15
B 2.9
(-3)
A 		9.6
(0.6)
A 		9.3
(0.4)
A 		14.2
(3)
A 		11
C 9.5
(-2.4)
A 		18.1
(2)
A 		8.4
(-3)
A 		20.1
(3)
A 		12
avr 8.3
(-3) 		11.7
(-1.1) 		9.7
(-2.2) 		18.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 13.5
(-1.4)
A 		6.8
(-3)
A 		9.7
(-2.3)
A 		11.4
(-1.9)
A 		32.3
(3)
A 		12.3
(-1.7)
A 		26
B 10.1
(-2.2)
A 		2.9
(-3)
A 		9.4
(-2.3)
A 		17.5
(-1.4)
A 		57.4
(3)
A 		16.9
(-1.5)
A 		55
C 10.8
(-2.5)
A 		10.9
(-2.4)
A 		6.4
(-3)
A 		41.3
(1.3)
A 		54.9
(3)
A 		43.4
(1.6)
A 		49
avr 11.5
(-2.3) 		6.9
(-3) 		8.5
(-2.8) 		23.4
(-0.6) 		48.2
(3) 		24.2
(-0.5) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.6
(3)
A 		1.6
(-3)
A 		3
(-0.2)
A 		3.3
(0.4)
A 		3
B 0.9
(-3)
A 		2.4
(1.3)
A 		2.2
(0.7)
A 		3
(3)
A 		2
C 3.1
(-2.5)
A 		5.2
(3)
A 		2.9
(-3)
A 		3.4
(-1.7)
A 		2
avr 2.9
(-0.6) 		3.1
(1.8) 		2.7
(-3) 		3.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.5
(-2.7)
A 		2.4
(-2.8)
A 		2.1
(-3)
A 		2.9
(-2.4)
A 		9.7
(3)
A 		3
(-2.3)
A 		8
B 3.5
(-2.3)
A 		1
(-3)
A 		2.3
(-2.7)
A 		4.6
(-2)
A 		23.3
(3)
A 		6.3
(-1.6)
A 		22
C 4
(-2.1)
A 		3.3
(-2.4)
A 		1.6
(-3)
A 		8.3
(-0.5)
A 		17.8
(3)
A 		14.5
(1.8)
A 		16
avr 3.3
(-2.5) 		2.2
(-2.9) 		2
(-3) 		5.3
(-1.7) 		16.9
(3) 		7.9
(-0.6) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172619_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4537
Sequence Type Exemplar sequence
Representative Public ID C33F10.10 NCBI
Target Description C33F10.10 /REP_DB=WormBase Gene ID /WP=CE04142 /TR=Q18387 /GB=AAK31478.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C33F10.10
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C33F10.10 C33F10.10 /REP_DB=WormBase Gene ID /WP=CE04142 /TR=Q18387 /GB=AAK31478.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069060 1/11 Cross Hyb Matching Probes A 
NM_069061 1/11 Cross Hyb Matching Probes A 
SNAP00000029844 1/11 Cross Hyb Matching Probes None
SNAP00000029845 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029848 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029850 1/11 Cross Hyb Matching Probes None
Y59H11AM.3 1/11 Cross Hyb Matching Probes A 
Y59H11AM.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4832955-4833075(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172619_X_AT
ggctatcgatatgattgtcgagcccaagtgggttgtccaaaactttggaaacatccgcat
cctcgatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTATCGATATGATTGTCGAGCCC 635 537 15 Antisense
GATATGATTGTCGAGCCCAAGTGGG 608 423 22 Antisense
TATGATTGTCGAGCCCAAGTGGGTT 50 655 24 Antisense
GATTGTCGAGCCCAAGTGGGTTGTC 684 433 27 Antisense
TTGTCGAGCCCAAGTGGGTTGTCCA 439 699 29 Antisense
GTCGAGCCCAAGTGGGTTGTCCAAA 323 401 31 Antisense
GAGCCCAAGTGGGTTGTCCAAAACT 613 385 34 Antisense
AAAACTTTGGAAACATCCGCATCCT 222 131 53 Antisense
AACTTTGGAAACATCCGCATCCTCG 134 139 55 Antisense
TTGGAAACATCCGCATCCTCGATGT 283 709 59 Antisense
TGGAAACATCCGCATCCTCGATGTC 660 547 60 Antisense
Sequence Source Affymetrix Proprietary Database