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[172616_x_at]

Description Y116A8C.41 /REP_DB=WormBase Gene ID /WP=CE24154 /TR=Q9U2R9 /GB=CAB55158.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 43      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 71      6grp_total > 11      4grp_total > 04      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3561
1 2 3 4 range
A 493.5
(-2.4)
P 		201.6
(-2.9)
P 		157.3
(-3)
P 		3654.8
(3)
P 		3498
B 699.1
(0)
P 		147.6
(-3)
P 		149.6
(-3)
P 		1243.1
(3)
P 		1096
C 576.9
(-2.1)
P 		174.2
(-2.9)
P 		93.9
(-3)
P 		3344.5
(3)
P 		3251
avr 589.8
(-2) 		174.5
(-2.9) 		133.6
(-3) 		2747.5
(3) 		2614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 975
1 2 3 4 5 6 range
A 260.7
(-2.1)
P 		185.9
(-2.6)
P 		1018.3
(3)
P 		118.8
(-3)
P 		412.9
(-1)
P 		227.4
(-2.3)
P 		900
B 413.9
(2.1)
P 		450.9
(3)
P 		381
(1.4)
P 		191.9
(-3)
P 		229.6
(-2.1)
P 		316.6
(-0.1)
P 		259
C 104.5
(-2.7)
P 		1036.4
(3)
P 		192.4
(-2.2)
P 		281.5
(-1.6)
P 		61.4
(-3)
P 		325.4
(-1.4)
P 		975
avr 259.7
(-2) 		557.7
(3) 		530.6
(2.5) 		197.4
(-3) 		234.6
(-2.4) 		289.8
(-1.5) 		360
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 179.7
(-1.3)
P 		43.8
(-3)
P 		41.1
(-3)
P 		535
(3)
P 		494
B 222.9
(1.9)
P 		36.4
(-3)
P 		34.7
(-3)
P 		264.9
(3)
P 		230
C 191
(-1.2)
P 		50.1
(-2.8)
P 		32.7
(-3)
P 		563.9
(3)
P 		531
avr 197.9
(-0.7) 		43.4
(-2.9) 		36.2
(-3) 		454.6
(3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 48.1
(-2.4)
P 		66.1
(-1.9)
P 		221.8
(3)
P 		30.1
(-3)
P 		124.6
(-0)
P 		55.4
(-2.2)
P 		192
B 144
(2.6)
P 		150.1
(3)
P 		92.5
(-0.5)
P 		50.8
(-3)
P 		93.3
(-0.4)
P 		118.1
(1.1)
P 		99
C 38.7
(-2.6)
P 		316.2
(3)
P 		49
(-2.4)
P 		56.6
(-2.3)
P 		19.9
(-3)
P 		108.9
(-1.2)
P 		296
avr 76.9
(-1.6) 		177.5
(3) 		121.1
(0.4) 		45.8
(-3) 		79.3
(-1.5) 		94.1
(-0.8) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172616_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9207
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.41 NCBI
Target Description Y116A8C.41 /REP_DB=WormBase Gene ID /WP=CE24154 /TR=Q9U2R9 /GB=CAB55158.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070640 NCBI Caenorhabditis elegans Y116A8C.41 (Y116A8C.41) mRNA, complete cds. 11/11 None
GENEFINDER00000004189 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17147916:17151009:-1 11/11 None
Y116A8C.41 ENSEMBL cdna:known chromosome:CEL140:IV:17147916:17150927:-1 gene:Y116A8C.41 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077120 1/11 Cross Hyb Matching Probes A 
NM_073039 1/11 Cross Hyb Matching Probes A 
NM_061393 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 3/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033792 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005827 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 1/11 Cross Hyb Matching Probes None
T02H6.3 2/11 Cross Hyb Matching Probes A 
Y54B9A.1 1/11 Cross Hyb Matching Probes A 
C24A3.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.41
Entrez Gene 191008 Entrez gene
SwissProt Q9U2R9 EMBL-EBI
WormBase CE24154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55158 Hypothetical protein Y116A8C.41 [Caenorhabditis elegans] ref|NP_503041.1| Y116A8C.41 [Caenorhabditis elegans] 1.0E-140
blast CAB55158 Hypothetical protein Y116A8C.41 [Caenorhabditis elegans] ref|NP_503041.1| Y116A8C.41 [Caenorhabditis elegans] 1.0E-139
blast AAF39963 Hypothetical protein T02H6.3 [Caenorhabditis elegans] ref|NP_493794.1| T02H6.3 [Caenorhabditis elegans] 9.0E-80
blast AAF39963 Hypothetical protein T02H6.3 [Caenorhabditis elegans] ref|NP_493794.1| T02H6.3 [Caenorhabditis elegans] 1.0E-79
blast T31576 hypothetical protein Y105C5A.s - Caenorhabditis elegans 5.0E-49
blast T31576 hypothetical protein Y105C5A.s - Caenorhabditis elegans 6.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.3E-7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.1E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.3E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.7E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.5E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.3E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.2E-7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.3E-7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.1E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.3E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.7E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.5E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.3E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503041.1 2 4-25,32-51
Y116A8C.41 2 4-25,32-51
GENEFINDER00000004189 2 31-53,60-79
Sequence
Target Sequence 
>C. ELEGANS:172616_X_AT
ggagtctacaagtatctcatgtgctatatttcgctgtttgaagtgtactactcaatttgg
gatatgatgacagaaccgaaaaagaaccttcgtgtcgagacccatcgtggtgagaaccat
cgtggtgagacccatcgtggtgagacccaccgtggtgagacccttcgtggtgagacccat
cggggtgagacccatcgtggtgagacctttcgtggtgagacccatcggggtgagacccat
cgtggtgagacctttcgtggtgagacccatcgtggtgagaccttttgtggagagacccat
cgtggtgagacctttcgtagtgagacccatcgtggtgagacccatcgtggtgagaccttt
cgtggtgagacctttcgtggagaggcccatcgtggtgaggcccatcgtggtgagacccat
cgtggtgagacccatcgtggtgagacccagcgtggtgagacctttcgtggagagacccat
cgtggtgagacttatcgtggtgagacgcatcgtggtgagacgcatcgtggtgagaccttt
cgtggtgagacacttcgtggtgagacccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTCTACAAGTATCTCATGTGCT 208 517 106 Antisense
CTCATGTGCTATATTTCGCTGTTTG 400 229 121 Antisense
GAACCATCGTGGTGAGACCCATCGT 310 345 219 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 532 551 258 Antisense
GAGAGACCCATCGTGGTGAGACCTT 333 395 395 Antisense
GACCTTTCGTAGTGAGACCCATCGT 434 383 414 Antisense
CCATCGTGGTGAGACCCATCGTGGT 123 271 432 Antisense
GTGAGACCTTTCGTGGAGAGGCCCA 484 481 470 Antisense
AGAGGCCCATCGTGGTGAGGCCCAT 679 65 486 Antisense
GACGCATCGTGGTGAGACGCATCGT 138 381 609 Antisense
GAGACACTTCGTGGTGAGACCCATC 334 393 652 Antisense
Sequence Source Affymetrix Proprietary Database