[Home] | [Total List]

[172614_x_at]

Description C36A4.4 /REP_DB=WormBase Gene ID /WP=CE27831 /TR=SW:Q18493 /GB=CAA91270.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 48      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 651
1 2 3 4 range
A 222.1
(-3)
P 		458.8
(0.2)
P 		665.2
(3)
P 		289.8
(-2.1)
P 		443
B 239.1
(-3)
P 		475.8
(0.1)
P 		694.1
(3)
P 		364.7
(-1.3)
P 		455
C 281.9
(-3)
P 		531.2
(-0.5)
P 		873.2
(3)
P 		323.5
(-2.6)
P 		591
avr 247.7
(-3) 		488.6
(-0.1) 		744.2
(3) 		326
(-2.1) 		497

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1199
1 2 3 4 5 6 range
A 251.5
(-3)
P 		459.8
(-1.6)
P 		528.1
(-1.2)
P 		715.8
(0)
P 		1027
(2)
P 		1173.5
(3)
P 		922
B 342
(-3)
P 		440.6
(-2.4)
P 		528.8
(-1.8)
P 		607.7
(-1.3)
P 		1096.7
(1.9)
P 		1264.5
(3)
P 		923
C 403
(-3)
P 		491.6
(-2.5)
P 		619.1
(-1.8)
P 		761
(-0.9)
P 		1172.4
(1.4)
P 		1450.2
(3)
P 		1047
avr 332.2
(-3) 		464
(-2.2) 		558.7
(-1.6) 		694.8
(-0.7) 		1098.7
(1.8) 		1296.1
(3) 		964
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 80.9
(-1.2)
P 		99.6
(-0.4)
P 		173.9
(3)
P 		42.4
(-3)
P 		132
B 76.2
(-3)
P 		117.5
(-0.1)
P 		160.8
(3)
P 		77.7
(-2.9)
P 		85
C 93.3
(-2.1)
P 		152.7
(-0.6)
P 		304.4
(3)
P 		54.5
(-3)
P 		250
avr 83.5
(-2) 		123.3
(-0.5) 		213
(3) 		58.2
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 46.4
(-3)
P 		163.5
(-0.3)
P 		115
(-1.4)
P 		181.5
(0.1)
P 		309.9
(3)
P 		285.7
(2.4)
P 		264
B 119
(-3)
P 		146.6
(-2.5)
P 		128.4
(-2.8)
P 		160.9
(-2.3)
P 		445.6
(2.6)
P 		471.5
(3)
P 		353
C 149.4
(-3)
P 		150
(-3)
P 		157.6
(-2.9)
P 		153
(-2.9)
P 		379.4
(1.1)
P 		485.5
(3)
P 		336
avr 104.9
(-3) 		153.4
(-2.1) 		133.7
(-2.4) 		165.1
(-1.8) 		378.3
(2.3) 		414.2
(3) 		309
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172614_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8029
Sequence Type Exemplar sequence
Representative Public ID C36A4.4 NCBI
Target Description C36A4.4 /REP_DB=WormBase Gene ID /WP=CE27831 /TR=SW:Q18493 /GB=CAA91270.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065376 NCBI Caenorhabditis elegans C36A4.4 (C36A4.4) mRNA, complete cds. 11/11 A 
SNAP00000028394 ENSEMBL cdna:SNAP chromosome:CEL140:III:3841469:3843587:-1 11/11 None
GENEFINDER00000028409 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3841469:3843587:-1 11/11 None
SNAP00000011534 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4194282:4195887:1 9/11 None
C36A4.4.1 ENSEMBL cdna:known chromosome:CEL140:III:3841239:3843593:-1 gene:C36A4.4 11/11 None
C36A4.4.2 ENSEMBL cdna:known chromosome:CEL140:III:3841239:3843591:-1 gene:C36A4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068110 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000011542 8/11 Cross Hyb Matching Probes None
K06B9.2 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4188025-4195893(+) 95.54 95.54
chrIII:3841468-3844421(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36A4.4
Entrez Gene 175497 Entrez gene
SwissProt Q18493 EMBL-EBI
WormBase CE27831 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91270 Hypothetical protein C36A4.4 [Caenorhabditis elegans] ref|NP_497777.1| C36A4.4 [Caenorhabditis elegans] sp|Q18493|UAP1_CAEEL Probable UDP-N-acetylglucosamine pyrophosphorylase 0.0
blast T19764 hypothetical protein C36A4.4 - Caenorhabditis elegans 0.0
blast CAE58357 Hypothetical protein CBG01478 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 1.2E-23
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 2.4E-21
Sequence
Target Sequence 
>C. ELEGANS:172614_X_AT
gacgttgcaaccaagtgtgttccgaagcaaaaaggagaactcgtcggatcagtttgtctt
gatagaggactaccacgtgtcgttgaatattcggagcttggagccgagttggctgaacaa
aagacaccggatggaaaatatttgtttggtgcaggatctattgcaaatcactttttcacg
atggatttcatggatagagtctgctctccatcatctcgtcttccatatcatcgtgctcac
aagaagatttcctatgtgaatgagcagggaaccattgtcaaaccggaaaaaccaaatggt
atcaagctggagcagtttattttcgacgtcttcgagctctcgaagcgatttttcatttgg
gaggtggcgaggaacgaagagttttctccattgaaaaatgctcaatctgttggaactgat
tgtttgagcacttgtcagagagatttgtccaatgtgaacaagttgtggctggaacgtgtt
caagcgaaagtgactgcaactgaaaagccgatctacttgaagacaattgtctcctacaac
ggagagaatcttcaagaactccgtcatcgtgaaatttctgatagtgccttggaatccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTGCAACCAAGTGTGTTCCGA 412 377 997 Antisense
GAACTCGTCGGATCAGTTTGTCTTG 588 347 1033 Antisense
AGAGGACTACCACGTGTCGTTGAAT 42 65 1060 Antisense
GGAGCTTGGAGCCGAGTTGGCTGAA 261 521 1089 Antisense
TGGATAGAGTCTGCTCTCCATCATC 686 549 1187 Antisense
TCTTCCATATCATCGTGCTCACAAG 35 619 1215 Antisense
GAGCAGGGAACCATTGTCAAACCGG 387 373 1258 Antisense
GGAGCAGTTTATTTTCGACGTCTTC 257 521 1305 Antisense
TCGAGCTCTCGAAGCGATTTTTCAT 190 603 1328 Antisense
GAATCTTCAAGAACTCCGTCATCGT 694 327 1542 Antisense
TTCTGATAGTGCCTTGGAATCCGAT 702 691 1572 Antisense
Sequence Source Affymetrix Proprietary Database