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[172612_x_at]

Description F55C12.2 /REP_DB=WormBase Gene ID /WP=CE02771 /TR=Q20812 /GB=AAC71162.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 56      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 8.1
(-3)
A 		14.3
(-0.4)
A 		22.6
(3)
A 		10.3
(-2.1)
A 		15
B 12.7
(-0.3)
A 		8.6
(-1.4)
A 		25
(3)
A 		2.5
(-3)
A 		23
C 8.3
(-2.8)
A 		10.4
(-2.3)
A 		36.8
(3)
A 		7.1
(-3)
A 		30
avr 9.7
(-2.1) 		11.1
(-1.7) 		28.1
(3) 		6.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 14.5
(-2.3)
A 		4.5
(-3)
A 		7
(-2.8)
A 		4.9
(-3)
A 		77
(2.3)
A 		86.9
(3)
P 		82
B 18.7
(-2.3)
A 		31.6
(-1.5)
A 		14.5
(-2.5)
A 		6.5
(-3)
A 		73.1
(1)
A 		105.3
(3)
P 		99
C 13.2
(-2.6)
A 		33
(-1.6)
A 		44.8
(-0.9)
A 		6.8
(-3)
A 		78.4
(0.9)
A 		115.7
(3)
P 		109
avr 15.5
(-2.4) 		23
(-1.9) 		22.1
(-2) 		6.1
(-3) 		76.2
(1.4) 		102.6
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3
(-1)
A 		3.1
(-0.8)
A 		5.9
(3)
A 		1.5
(-3)
A 		4
B 4
(1)
A 		2.1
(-1.2)
A 		5.8
(3)
A 		0.5
(-3)
A 		5
C 2.8
(-2.2)
A 		3
(-2.1)
A 		12.8
(3)
A 		1.2
(-3)
A 		12
avr 3.3
(-1.1) 		2.7
(-1.6) 		8.2
(3) 		1.1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.7
(-2.6)
A 		1.6
(-2.9)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		23.2
(3)
A 		21.2
(2.5)
P 		22
B 6.5
(-2.2)
A 		10.5
(-1.6)
A 		3.5
(-2.7)
A 		1.7
(-3)
A 		29.7
(1.5)
A 		39.3
(3)
P 		38
C 4.9
(-2.4)
A 		10.1
(-1.6)
A 		11.4
(-1.4)
A 		1.4
(-3)
A 		25.4
(0.9)
A 		38.7
(3)
P 		37
avr 4.7
(-2.4) 		7.4
(-1.9) 		5.5
(-2.2) 		1.5
(-3) 		26.1
(1.7) 		33.1
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172612_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4350
Sequence Type Exemplar sequence
Representative Public ID F55C12.2 NCBI
Target Description F55C12.2 /REP_DB=WormBase Gene ID /WP=CE02771 /TR=Q20812 /GB=AAC71162.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062773(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062773 NCBI Caenorhabditis elegans F55C12.2 (F55C12.2) mRNA, complete cds. 11/11 None
SNAP00000011035 ENSEMBL cdna:SNAP chromosome:CEL140:II:5877152:5877366:1 11/11 None
GENEFINDER00000011042 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5877250:5877366:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068314 4/11 Cross Hyb Matching Probes A 
NM_068358 2/11 Cross Hyb Matching Probes A 
SNAP00000002638 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002658 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002661 2/11 Cross Hyb Matching Probes None
SNAP00000029406 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029411 4/11 Cross Hyb Matching Probes None
SNAP00000043996 2/11 Cross Hyb Matching Probes None
R13H9.5 4/11 Cross Hyb Matching Probes A 
F36H12.8 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5877246-5877363(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 186302 Entrez gene
WormBase CE02771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY55831 Hypothetical protein F55C12.2 [Caenorhabditis elegans] ref|NP_495174.1| F55C12.2 [Caenorhabditis elegans] pir||T34310 hypothetical protein F55C12.2 - Caenorhabditis elegans 4.0E-17
blast AAK85494 Hypothetical protein R13H9.5 [Caenorhabditis elegans] ref|NP_500715.1| R13H9.5 [Caenorhabditis elegans] 2.0E-16
blast AAC26932 Hypothetical protein F36H12.8 [Caenorhabditis elegans] ref|NP_500759.1| F36H12.8 [Caenorhabditis elegans] 5.0E-16
Sequence
Target Sequence 
>C. ELEGANS:172612_X_AT
atgaagcaagccttggccaactgcggaaagcccgaataccagtatgactgggagccagga
attccgctcaactacatgacgatggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAGCAAGCCTTGGCCAACTGCG 662 43 13 Antisense
AAGCCTTGGCCAACTGCGGAAAGCC 654 147 20 Antisense
CCTTGGCCAACTGCGGAAAGCCCGA 398 267 23 Antisense
GCCAACTGCGGAAAGCCCGAATACC 569 277 28 Antisense
GCGGAAAGCCCGAATACCAGTATGA 457 293 35 Antisense
AAAGCCCGAATACCAGTATGACTGG 332 125 39 Antisense
GACTGGGAGCCAGGAATTCCGCTCA 553 375 58 Antisense
CAGGAATTCCGCTCAACTACATGAC 431 207 68 Antisense
GAATTCCGCTCAACTACATGACGAT 650 323 71 Antisense
ATTCCGCTCAACTACATGACGATGG 247 9 73 Antisense
TCCGCTCAACTACATGACGATGGAA 351 595 75 Antisense
Sequence Source Affymetrix Proprietary Database