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[172611_x_at]

Description Y24F12A.3 /REP_DB=WormBase Gene ID /WP=CE24194 /TR=Q9U2Q6 /GB=CAB60326.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 42      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 65.1
(-3)
A 		83.5
(1.2)
A 		70.7
(-1.7)
A 		91.4
(3)
A 		26
B 56.4
(1)
A 		72.2
(2.4)
A 		78.4
(3)
A 		13.2
(-3)
A 		65
C 33.1
(-3)
A 		57.3
(0.4)
A 		41
(-1.9)
A 		75.8
(3)
A 		43
avr 51.5
(-3) 		71
(3) 		63.4
(0.7) 		60.1
(-0.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 87.6
(3)
A 		41.9
(-0.5)
A 		85.9
(2.9)
A 		63.7
(1.2)
A 		8.7
(-3)
A 		22.4
(-2)
A 		79
B 47.6
(-2.1)
A 		75.1
(3)
A 		51.3
(-1.4)
A 		56.1
(-0.5)
A 		74.6
(2.9)
A 		42.9
(-3)
A 		32
C 74.7
(1.8)
A 		84.1
(3)
A 		55.9
(-0.5)
A 		36.4
(-3)
A 		39.2
(-2.6)
A 		69.9
(1.2)
A 		48
avr 70
(3) 		67
(2.4) 		64.4
(1.8) 		52.1
(-0.7) 		40.8
(-3) 		45.1
(-2.1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 23.7
(3)
A 		18.1
(-0.3)
A 		18.5
(-0)
A 		13.4
(-3)
A 		10
B 18
(2.9)
A 		17.8
(2.8)
A 		18.2
(3)
A 		2.8
(-3)
A 		15
C 11
(-3)
A 		16.5
(3)
A 		14.3
(0.6)
A 		12.8
(-1)
A 		6
avr 17.6
(3) 		17.5
(2.9) 		17
(2.5) 		9.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 16.2
(2.1)
A 		14.9
(1.6)
A 		18.7
(3)
A 		16.2
(2.1)
A 		2.6
(-3)
A 		5.5
(-1.9)
A 		16
B 16.6
(-1.6)
A 		25
(1.2)
A 		12.5
(-3)
A 		14.9
(-2.2)
A 		30.3
(3)
A 		16
(-1.8)
A 		18
C 27.7
(3)
A 		25.7
(2.4)
A 		14.2
(-1)
A 		7.3
(-3)
A 		12.7
(-1.4)
A 		23.4
(1.7)
A 		20
avr 20.2
(1.9) 		21.9
(3) 		15.1
(-1.5) 		12.8
(-3) 		15.2
(-1.4) 		15
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172611_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8621
Sequence Type Exemplar sequence
Representative Public ID Y24F12A.3 NCBI
Target Description Y24F12A.3 /REP_DB=WormBase Gene ID /WP=CE24194 /TR=Q9U2Q6 /GB=CAB60326.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069788(11), NM_069789(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069788 NCBI Caenorhabditis elegans Y24F12A.3 (Y24F12A.3) mRNA, complete cds. 11/11 A 
NM_069789 NCBI Caenorhabditis elegans Y24F12A.4 (Y24F12A.4) mRNA, complete cds. 9/11 A 
Y24F12A.3 ENSEMBL cdna:known chromosome:CEL140:IV:11608870:11610233:1 gene:Y24F12A.3 11/11 A 
Y24F12A.4 ENSEMBL cdna:known chromosome:CEL140:IV:11616579:11617954:-1 gene:Y24F12A.4 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059754 7/11 Cross Hyb Matching Probes A 
NM_001029781 1/11 Cross Hyb Matching Probes None
SNAP00000028617 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028618 5/11 Cross Hyb Matching Probes None
SNAP00000037635 8/11 Cross Hyb Matching Probes None
SNAP00000037637 6/11 Cross Hyb Matching Probes None
GENEFINDER00000037639 4/11 Cross Hyb Matching Probes None
SNAP00000038922 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015572 1/11 Cross Hyb Matching Probes None
SNAP00000015563 1/11 Cross Hyb Matching Probes None
SNAP00000015564 1/11 Cross Hyb Matching Probes None
SNAP00000010538 1/11 Cross Hyb Matching Probes None
VH15N14R.1 7/11 Cross Hyb Matching Probes A 
Y13C8A.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11608875-11610239(+) 67.21 100.0
chrIV:11616523-11617960(-) 71.02 98.37
Public Domain and Genome References
Gene Title

Ensembl Y24F12A.3
Y24F12A.4
Entrez Gene 189533 Entrez gene
189534 Entrez gene
SwissProt Q9U2Q6 EMBL-EBI
Q9U2Q5 EMBL-EBI
WormBase CE24194 Wormbase
CE24195 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60326 Hypothetical protein Y24F12A.3 [Caenorhabditis elegans] ref|NP_502189.1| Y24F12A.3 [Caenorhabditis elegans] 1.0E-116
blast CAB60327 Hypothetical protein Y24F12A.4 [Caenorhabditis elegans] ref|NP_502190.1| Y24F12A.4 [Caenorhabditis elegans] 1.0E-113
blast CAB60327 Hypothetical protein Y24F12A.4 [Caenorhabditis elegans] ref|NP_502190.1| Y24F12A.4 [Caenorhabditis elegans] 1.0E-93
blast CAB60326 Hypothetical protein Y24F12A.3 [Caenorhabditis elegans] ref|NP_502189.1| Y24F12A.3 [Caenorhabditis elegans] 1.0E-93
blast CAB76736 Hypothetical protein VH15N14R.1 [Caenorhabditis elegans] emb|CAB76719.1| Hypothetical protein VH15N14R.1 [Caenorhabditis elegans] ref|NP_492155.1| VH15N14R.1 [Caenorhabditis elegans] 4.0E-89
Sequence
Target Sequence 
>C. ELEGANS:172611_X_AT
cgaggaggtacgagtcttcttcccaggaggccaaagaggtcttctgatggagagggggag
agctgaccgcgtgctcttctacttcccaggagcaaacttttcgaataggcgacgccattt
cataatggaacgaacgacgacggaaggaagaaaccggtggcgatggtctggagttgaatt
ggatcgagatcacactcacaagatctcgaaccacaatggatcgagatggaacgatggact
cgaatggaacaatcgggatcagcggacaggatggatcgagatggcggatggacgacgacg
acgacgacgacgtcgaggacgacgtcgacgacgaaggatggatcgggatggatcgggatg
gatcgggattgatcgggatggctcgggatggatcgaggtggatcgggatggatcgggatg
gatcgaggtggatcgggatggatcgggagggattgggatgaatcgggagaaggcgacgac
gacgacgacaacgacgacgacgacaacgaaggatcgggatgaatggaggcaatccgaaag
ttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGGAGGTACGAGTCTTCTTCCCA 220 249 165 Antisense
TGGAGAGGGGGAGAGCTGACCGCGT 610 541 212 Antisense
GCTCTTCTACTTCCCAGGAGCAAAC 266 301 237 Antisense
GAAACCGGTGGCGATGGTCTGGAGT 428 357 314 Antisense
TCACACTCACAAGATCTCGAACCAC 105 629 354 Antisense
GGAACAATCGGGATCAGCGGACAGG 357 527 410 Antisense
GATGGCGGATGGACGACGACGACGA 5 407 444 Antisense
GATTGATCGGGATGGCTCGGGATGG 99 435 531 Antisense
AGAAGGCGACGACGACGACGACAAC 369 75 632 Antisense
GACGACGACAACGACGACGACGACA 435 379 645 Antisense
GAATGGAGGCAATCCGAAAGTTCGG 304 333 685 Antisense
Sequence Source Affymetrix Proprietary Database