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[172607_x_at]

Description Y54G11A.8 /REP_DB=WormBase Gene ID /WP=CE22480 /TR=Q9XW00 /GB=CAA22452.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 72      6grp_total > 45      4grp_total > 57      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 452.2
(-0.5)
P 		487.3
(1.9)
P 		415.7
(-3)
P 		502.9
(3)
P 		87
B 466.4
(-2.2)
P 		455.5
(-3)
P 		540.2
(3)
P 		464.3
(-2.4)
P 		85
C 534.6
(0)
P 		578.6
(1.5)
P 		622.5
(3)
P 		446.1
(-3)
P 		176
avr 484.4
(-1.5) 		507.1
(0.9) 		526.1
(3) 		471.1
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 521.7
(1.2)
P 		471.4
(0.3)
P 		624.8
(3)
P 		351.1
(-1.9)
P 		289.2
(-3)
P 		403.3
(-1)
P 		336
B 583.5
(2.2)
P 		476.8
(-0.6)
P 		612.5
(3)
P 		432.4
(-1.7)
P 		385
(-3)
P 		540.2
(1.1)
P 		228
C 521.2
(3)
P 		435.8
(0.6)
P 		388
(-0.8)
P 		328.3
(-2.5)
P 		309.3
(-3)
P 		511
(2.7)
P 		212
avr 542.1
(3) 		461.3
(0.7) 		541.8
(3) 		370.6
(-1.8) 		327.8
(-3) 		484.8
(1.4) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 164.7
(3)
P 		105.8
(-0.9)
P 		108.7
(-0.7)
P 		73.6
(-3)
P 		91
B 148.7
(3)
P 		112.5
(-1.4)
P 		125.2
(0.2)
P 		98.9
(-3)
P 		50
C 177
(1.3)
P 		166.3
(0.9)
P 		217
(3)
P 		75.2
(-3)
P 		142
avr 163.5
(3) 		128.2
(0.4) 		150.3
(2) 		82.6
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 96.2
(-2.3)
P 		167.7
(3)
P 		136.1
(0.6)
P 		89
(-2.9)
P 		87.3
(-3)
P 		98.2
(-2.2)
P 		80
B 203
(3)
P 		158.7
(-0)
P 		148.7
(-0.7)
P 		114.5
(-3)
P 		156.4
(-0.2)
P 		201.4
(2.9)
P 		89
C 193.2
(3)
P 		133
(0.2)
P 		98.8
(-1.5)
P 		66
(-3)
P 		100.1
(-1.4)
P 		171.1
(2)
P 		127
avr 164.1
(3) 		153.1
(2.1) 		127.9
(0.1) 		89.8
(-3) 		114.6
(-1) 		156.9
(2.4) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172607_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3269
Sequence Type Exemplar sequence
Representative Public ID Y54G11A.8 NCBI
Target Description Y54G11A.8 /REP_DB=WormBase Gene ID /WP=CE22480 /TR=Q9XW00 /GB=CAA22452.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027304(11), NM_001027305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027304 NCBI Caenorhabditis elegans Y54G11A.8a (Y54G11A.8) mRNA, complete cds. 11/11 None
NM_001027305 NCBI Caenorhabditis elegans Y54G11A.8b (Y54G11A.8) mRNA, complete cds. 11/11 None
SNAP00000023655 ENSEMBL cdna:SNAP chromosome:CEL140:II:14340073:14344340:-1 11/11 None
GENEFINDER00000023696 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14340073:14344334:-1 11/11 None
Y54G11A.8a ENSEMBL cdna:known chromosome:CEL140:II:14339958:14344344:-1 gene:Y54G11A.8 11/11 A 
Y54G11A.8b ENSEMBL cdna:known chromosome:CEL140:II:14340073:14344334:-1 gene:Y54G11A.8 11/11 A 
B0513.7 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:13847749:13852687:-1 gene:B0513.7 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026156 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026168 3/11 Cross Hyb Matching Probes None
SNAP00000031789 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14340069-14344331(-) 100.0 100.0
chrIV:13847754-13852687(-) 97.57 97.73
Public Domain and Genome References
Ensembl Y54G11A.8
B0513.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22452 Hypothetical protein Y54G11A.8a [Caenorhabditis elegans] ref|NP_001022475.1| Y54G11A.8a [Caenorhabditis elegans] 0.0
blast CAE46690 Hypothetical protein Y54G11A.8b [Caenorhabditis elegans] ref|NP_001022476.1| Y54G11A.8b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172607_X_AT
ttgctcacggagctcttgtcgaagaccgacacactgtcgatacgtttggaccaatgtaca
ccgacccgattgcactttttggaatgacgttagaagcgtacgcgaattttttgattaatt
attgcggagagacccggatggcagaagttgaagaatatattgatgaagtcatgaagatat
cgtatcaaatctacggagccagctcggcacatacaataaatatgctcaataactttggag
caacgttagtgctcaaaaatcgattcgaattagcaaaaaaatacctagcaatcggtgtgg
atcgtattctctacgtgaacgagtgtgctcacatgctccctggatattattgcaattatg
ccgagtcattatttcatactgggcaaaagaatgaagccctggaattcgcacggaaagctg
tccaaatgagccggagtggcgacgatcgcgtccgccattacacacaaaactttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCACGGAGCTCTTGTCGAAGA 472 701 671 Antisense
GACACACTGTCGATACGTTTGGACC 619 363 698 Antisense
CGACCCGATTGCACTTTTTGGAATG 562 245 732 Antisense
ATCAAATCTACGGAGCCAGCTCGGC 183 27 854 Antisense
AATCGGTGTGGATCGTATTCTCTAC 648 167 960 Antisense
TGAACGAGTGTGCTCACATGCTCCC 105 575 986 Antisense
GCTCACATGCTCCCTGGATATTATT 462 301 997 Antisense
GCCGAGTCATTATTTCATACTGGGC 265 285 1030 Antisense
AAGCCCTGGAATTCGCACGGAAAGC 569 145 1064 Antisense
AATGAGCCGGAGTGGCGACGATCGC 291 163 1095 Antisense
GTCCGCCATTACACACAAAACTTTT 240 475 1120 Antisense
Sequence Source Affymetrix Proprietary Database