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[172606_x_at]

Description Y59E9AL.6 /REP_DB=WormBase Gene ID /WP=CE25514 /TR=Q9N328 /GB=AAF60823.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 3.2
(-3)
A 		14.2
(-0.8)
A 		30.6
(2.4)
A 		33.5
(3)
A 		30
B 3.6
(-3)
A 		4.8
(-2.8)
A 		4.2
(-2.9)
A 		46
(3)
A 		42
C 3.2
(-3)
A 		13
(-2.4)
A 		3.4
(-3)
A 		103.1
(3)
A 		100
avr 3.3
(-3) 		10.7
(-2.2) 		12.7
(-2) 		60.9
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 3.7
(-3)
A 		2.6
(-3)
A 		14.5
(-2.8)
A 		39.8
(-2.5)
A 		281.9
(0.8)
P 		439.4
(3)
P 		437
B 3.7
(-3)
A 		10.4
(-2.9)
A 		2
(-3)
A 		50.5
(-2.2)
A 		314.1
(2.3)
A 		357.4
(3)
P 		355
C 9.1
(-2.9)
A 		22.2
(-2.7)
A 		2.7
(-3)
A 		38.8
(-2.5)
A 		236.3
(0.4)
P 		409
(3)
P 		406
avr 5.5
(-3) 		11.7
(-2.9) 		6.4
(-3) 		43
(-2.4) 		277.4
(1.1) 		401.9
(3) 		396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.1
(-3)
A 		3.1
(-1.3)
A 		8
(3)
A 		4.9
(0.3)
A 		7
B 1.2
(-2.9)
A 		1.2
(-2.9)
A 		1
(-3)
A 		9.8
(3)
A 		9
C 1
(-3)
A 		3.7
(-2)
A 		1.2
(-2.9)
A 		17.4
(3)
A 		16
avr 1.1
(-3) 		2.7
(-2) 		3.4
(-1.6) 		10.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.9
(-3)
A 		3.2
(-2.9)
A 		10.1
(-2.5)
A 		85.1
(1.8)
P 		107
(3)
P 		106
B 1.3
(-3)
A 		3.5
(-2.9)
A 		0.5
(-3)
A 		13.4
(-2.4)
A 		127.6
(2.7)
A 		133.3
(3)
P 		133
C 3.4
(-2.9)
A 		6.8
(-2.7)
A 		0.7
(-3)
A 		7.8
(-2.7)
A 		76.5
(0.3)
P 		136.9
(3)
P 		136
avr 1.8
(-3) 		3.7
(-2.9) 		1.5
(-3) 		10.4
(-2.6) 		96.4
(1.6) 		125.7
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172606_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10866
Sequence Type Exemplar sequence
Representative Public ID Y59E9AL.6 NCBI
Target Description Y59E9AL.6 /REP_DB=WormBase Gene ID /WP=CE25514 /TR=Q9N328 /GB=AAF60823.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068344 NCBI Caenorhabditis elegans Y59E9AL.6 (Y59E9AL.6) mRNA, complete cds. 11/11 None
SNAP00000011360 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5224948:5225694:-1 11/11 None
GENEFINDER00000011367 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5224948:5225697:-1 11/11 None
Y59E9AL.6 ENSEMBL cdna:known chromosome:CEL140:IV:5224948:5225747:-1 gene:Y59E9AL.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011358 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011372 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5224953-5225703(-) 66.36 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59E9AL.6
Entrez Gene 177298 Entrez gene
SwissProt Q9N328 EMBL-EBI
WormBase CE25514 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172606_X_AT
gactatctgcatgtcactttgctgctcattggcccacttgccattctcatcggatgtgga
ggaaagaaaaaagcaccaccaccaaagtcggcatccaagatgactgctccacctgctcct
gcatcagcgcctcccgctgctccagacgcagcccctgctgctcctgatgctgcagctgca
ccagctgatggcgagaagaaagatggtgataagaagagtgagatgaaggaaggagaggaa
aagaagaacgaaaaaaaggaaggagatgagaaggacgaaaagaaggatgaggagaagaag
gatggagatgataagaaggacgaaaagaaggacgacgataagaaggacgagaagaaaagc
gacaagaaagatgaaaagaaggatgacaagaaagagaaggatgaggagaagaaggatgac
aagaaagaagacgagaaaaaggatgatgacaaaaaagatgacaagaaggaagccaagtcc
aagtccaagaagtccaacaaatccaagaaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATCTGCATGTCACTTTGCTGC 298 373 28 Antisense
TATCTGCATGTCACTTTGCTGCTCA 74 659 31 Antisense
CCACTTGCCATTCTCATCGGATGTG 350 275 61 Antisense
CACCACCAAAGTCGGCATCCAAGAT 147 201 104 Antisense
TCGGCATCCAAGATGACTGCTCCAC 383 607 115 Antisense
TGCTGCTCCTGATGCTGCAGCTGCA 146 583 183 Antisense
GATGCTGCAGCTGCACCAGCTGATG 72 411 193 Antisense
AGCTGCACCAGCTGATGGCGAGAAG 392 81 201 Antisense
GAAGGAAGCCAAGTCCAAGTCCAAG 538 331 492 Antisense
AAGTCCAAGTCCAAGAAGTCCAACA 435 157 502 Antisense
GAAGTCCAACAAATCCAAGAAATCC 623 335 516 Antisense
Sequence Source Affymetrix Proprietary Database