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[172604_x_at]

Description Y73C8C.3 /REP_DB=WormBase Gene ID /WP=CE20359 /TR=Q9TXW6 /GB=AAC69345.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 74.7
(0.6)
A 		49.7
(-3)
A 		91.5
(3)
A 		70.7
(0)
A 		42
B 59.1
(-1.3)
A 		107.3
(3)
A 		45.9
(-2.5)
M 		40.2
(-3)
A 		67
C 78.8
(0.9)
A 		90.2
(3)
A 		58
(-3)
P 		64.1
(-1.9)
P 		32
avr 70.9
(0.1) 		82.4
(3) 		65.1
(-1.3) 		58.3
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 41.8
(-2.2)
P 		34.9
(-3)
A 		45.1
(-1.8)
A 		59.9
(-0.1)
A 		86.2
(3)
M 		55.4
(-0.6)
P 		51
B 53.1
(1.5)
A 		56.5
(2.3)
P 		46.8
(0)
A 		37.5
(-2.2)
A 		59.5
(3)
A 		34
(-3)
A 		26
C 19.8
(-2.6)
A 		61
(3)
P 		33
(-0.8)
A 		57.9
(2.6)
A 		27.4
(-1.6)
A 		16.8
(-3)
A 		44
avr 38.2
(-2.2) 		50.8
(1.1) 		41.6
(-1.3) 		51.8
(1.4) 		57.7
(3) 		35.4
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 27.2
(3)
A 		10.8
(-2.8)
A 		23.9
(1.8)
A 		10.3
(-3)
A 		17
B 18.9
(0.5)
A 		26.5
(3)
A 		10.6
(-2.3)
M 		8.6
(-3)
A 		18
C 26.1
(3)
A 		25.9
(2.9)
A 		20.2
(0.7)
P 		10.8
(-3)
P 		15
avr 24.1
(3) 		21.1
(1.7) 		18.2
(0.5) 		9.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.7
(-3)
P 		12.4
(-1.5)
A 		9.8
(-2.3)
A 		15.2
(-0.5)
A 		26
(3)
M 		13.5
(-1.1)
P 		18
B 18.5
(0.6)
A 		18.8
(0.7)
P 		11.4
(-2.4)
A 		9.9
(-3)
A 		24.2
(3)
A 		12.7
(-1.8)
A 		14
C 7.3
(-2.2)
A 		18.6
(3)
P 		8.4
(-1.7)
A 		11.6
(-0.2)
A 		8.9
(-1.5)
A 		5.6
(-3)
A 		13
avr 11.2
(-2.2) 		16.6
(1.1) 		9.9
(-3) 		12.2
(-1.6) 		19.7
(3) 		10.6
(-2.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172604_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14988
Sequence Type Exemplar sequence
Representative Public ID Y73C8C.3 NCBI
Target Description Y73C8C.3 /REP_DB=WormBase Gene ID /WP=CE20359 /TR=Q9TXW6 /GB=AAC69345.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071453 NCBI Caenorhabditis elegans Y73C8C.3 (Y73C8C.3) mRNA, complete cds. 11/11 None
SNAP00000003103 ENSEMBL cdna:SNAP chromosome:CEL140:V:3115130:3120054:1 11/11 None
GENEFINDER00000003119 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3115130:3120054:1 11/11 None
Y73C8C.3 ENSEMBL cdna:known chromosome:CEL140:V:3115130:3117955:1 gene:Y73C8C.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071452 2/11 Cross Hyb Matching Probes A 
SNAP00000003102 2/11 Cross Hyb Matching Probes None
GENEFINDER00000003113 2/11 Cross Hyb Matching Probes None
Y73C8C.8 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3115129-3117955(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73C8C.3
Entrez Gene 190660 Entrez gene
SwissProt Q9TXW6 EMBL-EBI
WormBase CE20359 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69345 Hypothetical protein Y73C8C.3 [Caenorhabditis elegans] ref|NP_503854.1| Y73C8C.3 [Caenorhabditis elegans] 0.0
blast AAC69348 Hypothetical protein Y73C8C.8 [Caenorhabditis elegans] ref|NP_503853.1| Y73C8C.8 [Caenorhabditis elegans] 0.0
blast AAC04439 Hypothetical protein T22B2.1 [Caenorhabditis elegans] ref|NP_508680.1| T22B2.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 5.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 5.3E-5
Sequence
Target Sequence 
>C. ELEGANS:172604_X_AT
gacaattcgactccagatgaaacaaattcttgaccaccaaaacgctctagtcaaaaaatc
attgcaagtgatcgagagagatgaggagattcaacttttgaaaggtcagattcaagctca
acaaaatgctattgctcaacaaaaaatttccattagaaatctggagctggaaaatcgaaa
gttaatgcaaaagaagccaactcaagctgcagaaaccatccctcaaagatcaacagagga
gacggaaaaagttcaggctattttatttgaaatgctcaaagctcaagcagttttggaagt
cgaaagtccaatgaacaagatcaccaaaatgacctcaaaacttattgaaacttcactgaa
ccgggaaaacaaaataattgcaaaacgagaatttatatattttgaacgacaaatcagagg
atacacaaaggaagtggaaaaccggattaagatgatcaagtcaaatcaggatatcagcag
tgaccagattccggagctccgagactttccaactttctctgatgagttcttgaaggccta
taaggataccttcaaagagaatgctccactcatttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATTCGACTCCAGATGAAACAA 352 363 1887 Antisense
AATTCTTGACCACCAAAACGCTCTA 598 175 1911 Antisense
AACTCAAGCTGCAGAAACCATCCCT 217 141 2085 Antisense
GAAACCATCCCTCAAAGATCAACAG 398 357 2098 Antisense
GAAAGTCCAATGAACAAGATCACCA 330 361 2188 Antisense
TATTGAAACTTCACTGAACCGGGAA 709 659 2229 Antisense
AAATCAGGATATCAGCAGTGACCAG 464 117 2349 Antisense
CAGCAGTGACCAGATTCCGGAGCTC 553 197 2361 Antisense
ATTCCGGAGCTCCGAGACTTTCCAA 461 7 2374 Antisense
GACTTTCCAACTTTCTCTGATGAGT 615 371 2389 Antisense
CAAAGAGAATGCTCCACTCATTTGT 178 193 2439 Antisense
Sequence Source Affymetrix Proprietary Database