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[172603_x_at]

Description Y87G2A.12 /REP_DB=WormBase Gene ID /WP=CE23141 /TR=Q9NA27 /GB=CAB54495.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 18.6
(-1.9)
A 		7
(-3)
A 		17.2
(-2)
A 		70.9
(3)
A 		64
B 55
(0.9)
A 		77.2
(3)
A 		13.1
(-3)
A 		46.4
(0.1)
A 		64
C 20.9
(-1.8)
A 		63.9
(1.1)
A 		3.4
(-3)
A 		91.4
(3)
A 		88
avr 31.5
(-0.9) 		49.4
(0.9) 		11.2
(-3) 		69.6
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 50.2
(3)
A 		7.5
(-2.7)
A 		42.7
(2)
A 		20.9
(-0.9)
A 		35.2
(1)
A 		5.6
(-3)
A 		45
B 37.1
(1.8)
A 		7.7
(-3)
A 		9.8
(-2.7)
A 		44.3
(3)
A 		11.4
(-2.4)
A 		21.4
(-0.8)
A 		37
C 33
(-0.5)
A 		42.5
(0.8)
A 		45
(1.2)
A 		57.7
(3)
A 		31.4
(-0.7)
A 		15.4
(-3)
A 		42
avr 40.1
(2.8) 		19.2
(-1.9) 		32.5
(1.1) 		41
(3) 		26
(-0.3) 		14.1
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.8
(0.6)
A 		1.5
(-3)
A 		4.5
(-1)
A 		10.4
(3)
A 		9
B 17.5
(2.4)
A 		19.1
(3)
A 		3
(-3)
A 		9.9
(-0.4)
A 		16
C 6.9
(-1)
A 		18.4
(3)
A 		1.2
(-3)
A 		15.4
(2)
A 		17
avr 10.4
(1.5) 		13
(3) 		2.9
(-3) 		11.9
(2.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.3
(2.2)
A 		2.7
(-2.2)
A 		9.3
(2.2)
A 		5.3
(-0.5)
A 		10.6
(3)
A 		1.4
(-3)
A 		9
B 12.9
(3)
A 		2.6
(-2.9)
A 		2.4
(-3)
A 		11.7
(2.3)
A 		4.6
(-1.7)
A 		8
(0.2)
A 		11
C 12.2
(2.4)
A 		13
(3)
A 		11.5
(1.9)
A 		11.6
(1.9)
A 		10.2
(0.9)
A 		5.1
(-3)
A 		8
avr 11.5
(3) 		6.1
(-1.8) 		7.7
(-0.4) 		9.5
(1.2) 		8.5
(0.3) 		4.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172603_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.945
Sequence Type Exemplar sequence
Representative Public ID Y87G2A.12 NCBI
Target Description Y87G2A.12 /REP_DB=WormBase Gene ID /WP=CE23141 /TR=Q9NA27 /GB=CAB54495.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060983 NCBI Caenorhabditis elegans Y87G2A.12 (Y87G2A.12) mRNA, complete cds. 11/11 A 
SNAP00000019595 ENSEMBL cdna:SNAP chromosome:CEL140:I:13603174:13605549:1 11/11 None
GENEFINDER00000019613 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13603174:13605549:1 11/11 None
Y87G2A.12 ENSEMBL cdna:known chromosome:CEL140:I:13603174:13605549:1 gene:Y87G2A.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073699 3/11 Cross Hyb Matching Probes A 
NM_074241 3/11 Cross Hyb Matching Probes A 
SNAP00000007085 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007112 3/11 Cross Hyb Matching Probes None
SNAP00000008986 3/11 Cross Hyb Matching Probes None
GENEFINDER00000009985 3/11 Cross Hyb Matching Probes None
K01D12.2 6/11 Cross Hyb Matching Probes A 
Y50E8A.8 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13603104-13605480(+) 70.75 100.0
Public Domain and Genome References
Gene Title
Ensembl Y87G2A.12
Entrez Gene 190779 Entrez gene
SwissProt Q9NA27 EMBL-EBI
WormBase CE23141 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54495 Hypothetical protein Y87G2A.12 [Caenorhabditis elegans] ref|NP_493384.1| Y87G2A.12 [Caenorhabditis elegans] 0.0
blast CAA99870 Hypothetical protein K01D12.2 [Caenorhabditis elegans] ref|NP_506100.1| K01D12.2 [Caenorhabditis elegans] 0.0
blast AAG24103 Hypothetical protein F41B5.6 [Caenorhabditis elegans] ref|NP_503614.1| F41B5.6 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172603_X_AT
gtcgaggactcgcagcagttggattcaaaggatcagtatcaaaaagtatcagaacttcaa
gatgattttatcgaaaccgtggaaacaaagtccataacgcgaatcaacaatgaaggattt
tctccagatgcaatggagaaatacggacaaagcagaagcagtttttcttctgaaaaacac
tccaccaccacacattacacgccagctgaagaatcacataactttggattcaatcttcac
gtagaccacaagataacaactcaatggcaagatgataagcatccctgggatccagggaca
caacaaagatatcaactagcgcctcgaacacaatggatgcctaaaccactgctcgatcaa
gcagcgatattgtcatttctgagtatactgtatatttttagcattcctcatggactttca
acttgcaatgtgttttcaatctggcctcaatggaattttggaaactctaacaattattgg
atgccaatcggacaaggctcacacttcttctcttatttgctgcggcctcggagcgccgcc
aatctccaatttcgattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAGGACTCGCAGCAGTTGGATT 45 473 1759 Antisense
TTCTTCTGAAAAACACTCCACCACC 144 689 1923 Antisense
CCACACATTACACGCCAGCTGAAGA 508 275 1946 Antisense
GGATTCAATCTTCACGTAGACCACA 262 509 1984 Antisense
AAAGATATCAACTAGCGCCTCGAAC 599 121 2063 Antisense
TAGCGCCTCGAACACAATGGATGCC 267 649 2075 Antisense
AATGGATGCCTAAACCACTGCTCGA 189 163 2090 Antisense
ATTCCTCATGGACTTTCAACTTGCA 529 7 2161 Antisense
GCAATGTGTTTTCAATCTGGCCTCA 684 321 2183 Antisense
CAATCGGACAAGGCTCACACTTCTT 381 181 2243 Antisense
GCCGCCAATCTCCAATTTCGATTGC 672 285 2293 Antisense
Sequence Source Affymetrix Proprietary Database