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[172601_x_at]

Description C16C4.14 /REP_DB=WormBase Gene ID /WP=CE08210 /TR=O16562 /GB=AAB93658.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 32      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 28.7
(-1.4)
P 		2.6
(-3)
A 		5.3
(-2.8)
A 		97.7
(3)
P 		95
B 26.5
(1.1)
A 		30.1
(3)
A 		18.9
(-3)
P 		27.6
(1.7)
A 		11
C 41.3
(-1.1)
P 		53.9
(-0.2)
P 		17
(-3)
P 		95.7
(3)
P 		79
avr 32.2
(-1.2) 		28.9
(-1.5) 		13.7
(-3) 		73.7
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 24.5
(2.9)
A 		1.7
(-2.9)
A 		24.8
(3)
A 		2
(-2.8)
A 		11.4
(-0.4)
A 		1.3
(-3)
A 		24
B 15.3
(-0.8)
M 		20
(0.8)
A 		23.3
(1.9)
P 		26.6
(3)
A 		8.7
(-3)
A 		9.3
(-2.8)
A 		18
C 14.1
(1)
A 		20.1
(3)
M 		6.6
(-1.6)
A 		15
(1.3)
A 		19.7
(2.9)
A 		2.5
(-3)
A 		18
avr 18
(2.9) 		13.9
(1.1) 		18.2
(3) 		14.5
(1.4) 		13.3
(0.9) 		4.4
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.5
(1.3)
P 		0.6
(-3)
A 		1.4
(-2.6)
A 		14.3
(3)
P 		14
B 8.4
(3)
A 		7.4
(1.5)
A 		4.4
(-3)
P 		5.9
(-0.8)
A 		4
C 13.7
(1.6)
P 		15.5
(2.6)
P 		5.9
(-3)
P 		16.1
(3)
P 		10
avr 10.9
(2.1) 		7.8
(-0.1) 		3.9
(-3) 		12.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.5
(1.9)
A 		0.6
(-2.6)
A 		5.4
(3)
A 		0.5
(-2.8)
A 		3.4
(0.6)
A 		0.3
(-3)
A 		5
B 5.3
(0.1)
M 		6.6
(2.3)
A 		5.7
(0.8)
P 		7
(3)
A 		3.5
(-3)
A 		3.5
(-3)
A 		4
C 5.2
(1.7)
A 		6.1
(2.7)
M 		1.7
(-2)
A 		3
(-0.6)
A 		6.4
(3)
A 		0.8
(-3)
A 		6
avr 5
(3) 		4.4
(2) 		4.3
(1.8) 		3.5
(0.4) 		4.4
(2) 		1.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172601_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4957
Sequence Type Exemplar sequence
Representative Public ID C16C4.14 NCBI
Target Description C16C4.14 /REP_DB=WormBase Gene ID /WP=CE08210 /TR=O16562 /GB=AAB93658.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061711 NCBI Caenorhabditis elegans C16C4.14 (C16C4.14) mRNA, complete cds. 11/11 None
SNAP00000026909 ENSEMBL cdna:SNAP chromosome:CEL140:II:1889911:1890784:-1 11/11 None
GENEFINDER00000026915 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1889911:1890784:-1 11/11 None
C16C4.14 ENSEMBL cdna:known chromosome:CEL140:II:1889911:1890784:-1 gene:C16C4.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002419 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1889909-1890783(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.14
Entrez Gene 182668 Entrez gene
SwissProt O16562 EMBL-EBI
WormBase CE08210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93658 Hypothetical protein C16C4.14 [Caenorhabditis elegans] ref|NP_494112.1| C16C4.14 [Caenorhabditis elegans] 1.0E-152
blast AAB94973 Hypothetical protein F52C6.5 [Caenorhabditis elegans] ref|NP_494119.1| F52C6.5 [Caenorhabditis elegans] 1.0E-108
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 8.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.2E-19
Pfam IPR002083 EMBL-EBI MATH 1.2E-42
Sequence
Target Sequence 
>C. ELEGANS:172601_X_AT
ggaattggaattgcatcgaactatggaaaaagagcatttattagttggaatgatatggag
aaggattatgtgaccaatgatagtatcgatgtggaaattcgtgtgaaaataatcaatatc
actgaattgccatgcacggagaaaacatttgtactatcccatactgtcaagaacatgtca
agtattaaagaaggagaggaatacttctcggacattcaaactcgcttcaacattccatgg
tatttgcaagttaaaagacgagatggattcaatggactatttcttcattgttcaaaacat
ctagatgagttcagaaattggtcaattaaaactgaatatcaattcaaattagtgtcaact
aatggaagaaatgtcgcgttctatggcgaaaaggtgtttgaaaaaccagtgggcagcgga
tggggtaaactcatgagatgggaaaactggtcaagcagatgcaacgataatttcgttttt
gaagcgaatgtgaggattcttgacacgactggaattgaggacaagaatgatgttgatagg
ttctctggatttgcgattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTGGAATTGCATCGAACTATG 654 525 169 Antisense
AATATCACTGAATTGCCATGCACGG 584 171 283 Antisense
ACATTTGTACTATCCCATACTGTCA 259 105 313 Antisense
GAGAGGAATACTTCTCGGACATTCA 214 395 362 Antisense
TTCTCGGACATTCAAACTCGCTTCA 632 691 373 Antisense
CAAACTCGCTTCAACATTCCATGGT 567 191 385 Antisense
ACATTCCATGGTATTTGCAAGTTAA 56 105 398 Antisense
GATGGATTCAATGGACTATTTCTTC 133 407 430 Antisense
AAACCAGTGGGCAGCGGATGGGGTA 458 123 571 Antisense
GCGAATGTGAGGATTCTTGACACGA 25 289 652 Antisense
GATAGGTTCTCTGGATTTGCGATTC 443 425 703 Antisense
Sequence Source Affymetrix Proprietary Database