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[172600_x_at]

Description C29F9.10 /REP_DB=WormBase Gene ID /WP=CE08458 /TR=Q9TZC1 /GB=AAC68751.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 61      4grp_high_8_8 > 06      6grp_total > 62      4grp_total > 28      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 60.8
(3)
P 		55.3
(-2.3)
P 		54.6
(-3)
P 		55.6
(-2)
A 		6
B 44.8
(-0.4)
P 		71.2
(3)
P 		25.2
(-3)
A 		61.6
(1.7)
P 		46
C 60
(0.7)
P 		31.3
(-1.7)
P 		15
(-3)
A 		88.5
(3)
P 		74
avr 55.2
(0.8) 		52.6
(0.4) 		31.6
(-3) 		68.6
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 11.4
(-3)
A 		59.6
(-0.5)
P 		127.2
(3)
P 		84.9
(0.8)
P 		49.1
(-1)
M 		26.4
(-2.2)
A 		116
B 36.9
(-2.6)
P 		109.5
(1.2)
P 		87.4
(0.1)
P 		143.3
(3)
P 		52.2
(-1.8)
P 		28.3
(-3)
P 		115
C 34.7
(-2.6)
P 		77.8
(1.4)
P 		84.7
(2)
P 		95
(3)
P 		57.1
(-0.5)
P 		30.9
(-3)
M 		64
avr 27.7
(-3) 		82.3
(1.1) 		99.8
(2.4) 		107.7
(3) 		52.8
(-1.1) 		28.5
(-2.9) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 22.1
(3)
P 		12
(-1.3)
P 		14.3
(-0.3)
P 		8.1
(-3)
A 		14
B 14.3
(1.3)
P 		17.6
(3)
P 		5.8
(-3)
A 		13.1
(0.7)
P 		12
C 19.9
(3)
P 		9
(-1.4)
P 		5.2
(-3)
A 		14.9
(1)
P 		15
avr 18.8
(3) 		12.9
(-0.4) 		8.4
(-3) 		12
(-0.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.1
(-3)
A 		21.2
(1.5)
P 		27.7
(3)
P 		21.5
(1.5)
P 		14.8
(-0)
M 		6.4
(-2)
A 		26
B 12.8
(-2.5)
P 		36.4
(2.7)
P 		21.2
(-0.7)
P 		37.9
(3)
P 		21.2
(-0.7)
P 		10.6
(-3)
P 		27
C 12.9
(-1.9)
P 		23.7
(3)
P 		21.6
(2.1)
P 		19.1
(0.9)
P 		18.5
(0.7)
P 		10.4
(-3)
M 		13
avr 9.3
(-2.9) 		27.1
(3) 		23.5
(1.8) 		26.2
(2.7) 		18.2
(0) 		9.1
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172600_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8343
Sequence Type Exemplar sequence
Representative Public ID C29F9.10 NCBI
Target Description C29F9.10 /REP_DB=WormBase Gene ID /WP=CE08458 /TR=Q9TZC1 /GB=AAC68751.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064741 NCBI Caenorhabditis elegans C29F9.10 (C29F9.10) mRNA, complete cds. 11/11 None
SNAP00000042028 ENSEMBL cdna:SNAP chromosome:CEL140:III:106823:107452:-1 10/11 None
C29F9.10 ENSEMBL cdna:known chromosome:CEL140:III:106051:107452:-1 gene:C29F9.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064895 2/11 Cross Hyb Matching Probes A 
NM_064898 4/11 Cross Hyb Matching Probes B 
NM_064899 1/11 Cross Hyb Matching Probes A 
NM_064742 4/11 Cross Hyb Matching Probes A 
SNAP00000007696 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007715 4/11 Cross Hyb Matching Probes None
SNAP00000007700 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007711 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042038 6/11 Cross Hyb Matching Probes None
SNAP00000009968 1/11 Cross Hyb Matching Probes None
C29F9.11 4/11 Cross Hyb Matching Probes A 
T12B5.6 2/11 Cross Hyb Matching Probes A 
T12B5.8 4/11 Cross Hyb Matching Probes B 
T12B5.10 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:106050-107452(-) 97.7 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F9.10
Entrez Gene 175176 Entrez gene
SwissProt Q9TZC1 EMBL-EBI
WormBase CE08458 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68751 Hypothetical protein C29F9.10 [Caenorhabditis elegans] ref|NP_497142.1| C29F9.10 [Caenorhabditis elegans] 0.0
blast AAC68751 Hypothetical protein C29F9.10 [Caenorhabditis elegans] ref|NP_497142.1| C29F9.10 [Caenorhabditis elegans] 1.0E-107
blast AAC68752 Hypothetical protein C29F9.11 [Caenorhabditis elegans] ref|NP_497143.1| C29F9.11 [Caenorhabditis elegans] 2.0E-70
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 1.0E-68
blast AAC68752 Hypothetical protein C29F9.11 [Caenorhabditis elegans] ref|NP_497143.1| C29F9.11 [Caenorhabditis elegans] 1.0E-62
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 2.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.4E-30
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-34
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-34
Sequence
Target Sequence 
>C. ELEGANS:172600_X_AT
gaatttcggttttgatgaagtccttacgattctttcatggttagatgctaaaatgctcaa
aaagattgaattggttttcattgtgtcaattgaccaattcgaacgaataacccttttgga
gcaatggggaaatgcagaagaatttatactttgggattctaagattgccagtgcaatgat
tgttcatttttttcatttcaaattatcgaagcacgcacggaacattacaatttggaacaa
cacggatgatagatgcgacattgttacaactttcattaagattttcaaagccgaaaaatg
tattcacgtaaaagaaatagaactttggaatttcggttttgatgaagtccttacgattct
ttcatggttagatgctaaaatgctcaaaaagattgaattggttttcattgtgtcaattga
ccaattcgaacgaataacccttttggagcaatggggaaatgcagaagaatttatactttg
ggattctaagattgccagtgcaatgattgttcatttttttcatttcaaatgtttcactat
tgaccacactgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTCGGTTTTGATGAAGTCCTT 536 323 384 Antisense
GAAGTCCTTACGATTCTTTCATGGT 309 335 400 Antisense
TCGAACGAATAACCCTTTTGGAGCA 310 599 482 Antisense
TTCATTTCAAATTATCGAAGCACGC 155 687 575 Antisense
AAGCACGCACGGAACATTACAATTT 592 149 592 Antisense
GATGCGACATTGTTACAACTTTCAT 495 413 635 Antisense
TTTCGGTTTTGATGAAGTCCTTACG 152 653 714 Antisense
AGTCCTTACGATTCTTTCATGGTTA 303 61 729 Antisense
GAACGAATAACCCTTTTGGAGCAAT 536 343 811 Antisense
TGATTGTTCATTTTTTTCATTTCAA 18 565 887 Antisense
GTTTCACTATTGACCACACTGACGA 88 451 914 Antisense
Sequence Source Affymetrix Proprietary Database