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[172599_x_at]

Description F23H11.5 /REP_DB=WormBase Gene ID /WP=CE09613 /TR=O01917 /GB=AAC71133.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 27      6grp_total > 41      4grp_total > 24      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2967
1 2 3 4 range
A 6202.7
(-3)
P 		7604.8
(-0.2)
P 		8582.9
(1.8)
P 		9170
(3)
P 		2967
B 7930.2
(-0.3)
P 		7261.4
(-3)
P 		8053.9
(0.3)
P 		8723.4
(3)
P 		1462
C 6834
(-3)
P 		7715.6
(2.5)
P 		7094.9
(-1.4)
P 		7794.5
(3)
P 		961
avr 6989
(-3) 		7527.3
(-0.9) 		7910.6
(0.5) 		8562.6
(3) 		1574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4086
1 2 3 4 5 6 range
A 7270.9
(0)
P 		7127.1
(-0.2)
P 		9276.2
(3)
P 		7700.6
(0.6)
P 		6454.9
(-1.2)
P 		5258.3
(-3)
P 		4018
B 6854.3
(-0.7)
P 		7270.9
(-0.1)
P 		9344.3
(3)
P 		7511.5
(0.3)
P 		6190.3
(-1.7)
P 		5303.2
(-3)
P 		4041
C 6605.3
(-1.9)
P 		7584.2
(1.8)
P 		7886.9
(3)
P 		7890
(3)
P 		6504.2
(-2.3)
P 		6314.9
(-3)
P 		1575
avr 6910.2
(-0.6) 		7327.4
(0.2) 		8835.8
(3) 		7700.7
(0.9) 		6383.1
(-1.6) 		5625.5
(-3) 		3210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1215
1 2 3 4 range
A 2258.4
(3)
P 		1650.8
(-1)
P 		2243.7
(2.9)
P 		1342.3
(-3)
P 		916
B 2528.9
(3)
P 		1793.4
(-3)
P 		1866.3
(-2.4)
P 		1859
(-2.5)
P 		736
C 2262.2
(1.9)
P 		2218.3
(1.7)
P 		2472.8
(3)
P 		1314.3
(-3)
P 		1159
avr 2349.8
(3) 		1887.5
(-0.3) 		2194.3
(1.9) 		1505.2
(-3) 		845

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1255
1 2 3 4 5 6 range
A 1340.3
(-2.7)
P 		2534.7
(3)
P 		2020.2
(0.5)
P 		1953.1
(0.2)
P 		1947.8
(0.2)
P 		1280.2
(-3)
P 		1255
B 2385
(1.5)
P 		2420.2
(1.9)
P 		2269.1
(0.3)
P 		1989.5
(-2.9)
P 		2515
(3)
P 		1977.5
(-3)
P 		538
C 2448.3
(3)
P 		2314.2
(2.1)
P 		2007.4
(-0.1)
P 		1586.7
(-3)
P 		2104.7
(0.6)
P 		2114
(0.7)
P 		862
avr 2057.9
(-0.5) 		2423
(3) 		2098.9
(-0.1) 		1843.1
(-2.5) 		2189.2
(0.8) 		1790.6
(-3) 		632
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172599_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8263
Sequence Type Exemplar sequence
Representative Public ID F23H11.5 NCBI
Target Description F23H11.5 /REP_DB=WormBase Gene ID /WP=CE09613 /TR=O01917 /GB=AAC71133.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064890 NCBI Caenorhabditis elegans F23H11.5 (F23H11.5) mRNA, complete cds. 11/11 None
SNAP00000010296 ENSEMBL cdna:SNAP chromosome:CEL140:III:910105:910568:-1 11/11 None
GENEFINDER00000010308 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:910105:910568:-1 11/11 None
F23H11.5.2 ENSEMBL cdna:known chromosome:CEL140:III:909705:910571:-1 gene:F23H11.5 11/11 None
F23H11.5.1 ENSEMBL cdna:known chromosome:CEL140:III:909964:910576:-1 gene:F23H11.5 11/11 None
F23H11.5.3 ENSEMBL cdna:known chromosome:CEL140:III:909964:910569:-1 gene:F23H11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:910104-910568(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23H11.5
Entrez Gene 175254 Entrez gene
SwissProt O01917 EMBL-EBI
WormBase CE09613 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71133 Bmp receptor associated protein family protein 2 [Caenorhabditis elegans] ref|NP_497291.1| F23H11.5 [Caenorhabditis elegans] 2.0E-44
blast AAC71133 Bmp receptor associated protein family protein 2 [Caenorhabditis elegans] ref|NP_497291.1| F23H11.5 [Caenorhabditis elegans] 3.0E-42
blast CAE69141 Hypothetical protein CBG15171 [Caenorhabditis briggsae] 2.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497291.1 1 60-82
F23H11.5.2 1 60-82
F23H11.5.1 1 60-82
F23H11.5.3 1 60-82
SNAP00000010296 1 68-90
GENEFINDER00000010308 1 60-82
Sequence
Target Sequence 
>C. ELEGANS:172599_X_AT
ttcttggctcttagtcgttttgcacaaaagcgtcacgggcacggacatcacgtcgccaac
ccgggaccaccatgcaccttcgacttgatgccagtgccattccaatcttacaagaaggtc
tacggcgagctccagggaaagttcaacacctatcttgcagtgtcagcggttttcttcgct
tcgtcgttcgccaccgccatctacactaacctcttcgccttcgaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGGCTCTTAGTCGTTTTGCAC 378 689 37 Antisense
CGTTTTGCACAAAAGCGTCACGGGC 395 243 52 Antisense
CAAAAGCGTCACGGGCACGGACATC 47 191 61 Antisense
GCACCTTCGACTTGATGCCAGTGCC 573 313 110 Antisense
CCAGTGCCATTCCAATCTTACAAGA 158 273 127 Antisense
ACAAGAAGGTCTACGGCGAGCTCCA 178 113 146 Antisense
TACGGCGAGCTCCAGGGAAAGTTCA 689 645 157 Antisense
GGAAAGTTCAACACCTATCTTGCAG 395 527 172 Antisense
TATCTTGCAGTGTCAGCGGTTTTCT 626 657 187 Antisense
CAGTGTCAGCGGTTTTCTTCGCTTC 124 209 194 Antisense
CACTAACCTCTTCGCCTTCGAAGAA 544 195 240 Antisense
Sequence Source Affymetrix Proprietary Database