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[172598_x_at]

Description C52B11.4 /REP_DB=WormBase Gene ID /WP=CE04260 /TR=Q18774 /GB=AAA82471.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 84.3
(-1.7)
A 		75.3
(-2)
A 		49.7
(-3)
A 		210.4
(3)
P 		161
B 90.3
(-1.9)
A 		63.7
(-3)
A 		126.7
(-0.3)
A 		204.1
(3)
P 		140
C 88.9
(-1.5)
A 		102.2
(-1.1)
A 		42.3
(-3)
A 		227.3
(3)
P 		185
avr 87.8
(-2.4) 		80.4
(-2.7) 		72.9
(-3) 		213.9
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 4.7
(-3)
A 		18.6
(-2.5)
A 		130.4
(1.4)
A 		133.5
(1.5)
A 		178
(3)
P 		152
(2.1)
P 		173
B 108.8
(-1.3)
A 		78
(-2.4)
A 		59.9
(-3)
A 		84.2
(-2.2)
A 		235.8
(3)
P 		188.7
(1.4)
P 		176
C 50
(-1.6)
A 		77.6
(-0.7)
A 		7
(-3)
A 		93.4
(-0.2)
A 		115.7
(0.5)
A 		193.1
(3)
P 		186
avr 54.5
(-3) 		58.1
(-2.8) 		65.8
(-2.5) 		103.7
(-0.6) 		176.5
(2.9) 		177.9
(3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 30.7
(3)
A 		16.3
(-1.9)
A 		13
(-3)
A 		30.8
(3)
P 		18
B 28.8
(-0.2)
A 		15.7
(-3)
A 		29.4
(-0)
A 		43.5
(3)
P 		28
C 29.4
(0.7)
A 		29.4
(0.7)
A 		14.7
(-3)
A 		38.3
(3)
P 		24
avr 29.6
(0.4) 		20.5
(-2.5) 		19
(-3) 		37.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 0.9
(-3)
A 		6.6
(-2.4)
A 		28.4
(0.1)
A 		33.9
(0.8)
A 		53.7
(3)
P 		37
(1.1)
P 		53
B 37.8
(-1.3)
A 		25.9
(-2.2)
A 		14.5
(-3)
A 		22.3
(-2.4)
A 		95.8
(3)
P 		70.4
(1.1)
P 		81
C 18.5
(-1.4)
A 		23.7
(-0.9)
A 		1.8
(-3)
A 		18.8
(-1.4)
A 		37.4
(0.4)
A 		64.6
(3)
P 		63
avr 19.1
(-2.5) 		18.7
(-2.5) 		14.9
(-3) 		25
(-1.7) 		62.3
(3) 		57.3
(2.4) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172598_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18469
Sequence Type Exemplar sequence
Representative Public ID C52B11.4 NCBI
Target Description C52B11.4 /REP_DB=WormBase Gene ID /WP=CE04260 /TR=Q18774 /GB=AAA82471.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075836 NCBI Caenorhabditis elegans C52B11.4 (C52B11.4) mRNA, complete cds. 11/11 None
C52B11.4 ENSEMBL cdna:known chromosome:CEL140:X:1285204:1285858:1 gene:C52B11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063022 2/11 Cross Hyb Matching Probes A 
NM_070433 2/11 Cross Hyb Matching Probes A 
NM_001028150 1/11 Cross Hyb Matching Probes None
NM_064746 2/11 Cross Hyb Matching Probes A 
NM_001028287 1/11 Cross Hyb Matching Probes None
SNAP00000029215 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029228 4/11 Cross Hyb Matching Probes None
GENEFINDER00000042041 2/11 Cross Hyb Matching Probes None
SNAP00000011900 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011911 1/11 Cross Hyb Matching Probes None
SNAP00000015386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015389 1/11 Cross Hyb Matching Probes None
F22D3.5 2/11 Cross Hyb Matching Probes A 
F01D5.4 6/11 Cross Hyb Matching Probes None
C29F9.12 2/11 Cross Hyb Matching Probes A 
Y38H8A.7 1/11 Cross Hyb Matching Probes None
Y40H7A.7 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5142857-5143500(+) 97.99 97.99
chrX:1285203-1285858(+) 100.0 100.0
chrIV:11468378-11469021(+) 97.99 97.99
chrII:6938138-6938794(-) 98.8 98.8
chrII:14000268-14000924(-) 98.39 98.39
Public Domain and Genome References
Gene Title
Ensembl C52B11.4
Entrez Gene 183716 Entrez gene
SwissProt Q18774 EMBL-EBI
WormBase CE04260 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82471 Hypothetical protein C52B11.4 [Caenorhabditis elegans] ref|NP_508237.1| C52B11.4 [Caenorhabditis elegans] 2.0E-43
Sequence
Target Sequence 
>C. ELEGANS:172598_X_AT
ttcacaccttcagtgtcagctcgaagtctttgagtgctgattttggagacgttttctccc
gacaggtggatcaaaaactaaacaatcgtaatttgcgttttatatggttaaacggtagga
aggggaaggagcgggctgcgaactgccattgctgcaagaccacgcaggcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACACCTTCAGTGTCAGCTCGAA 605 685 35 Antisense
GTGTCAGCTCGAAGTCTTTGAGTGC 573 483 47 Antisense
GAAGTCTTTGAGTGCTGATTTTGGA 230 337 57 Antisense
GAGTGCTGATTTTGGAGACGTTTTC 352 401 66 Antisense
TTGGAGACGTTTTCTCCCGACAGGT 262 701 77 Antisense
GTTTTCTCCCGACAGGTGGATCAAA 455 447 85 Antisense
GGTGGATCAAAAACTAAACAATCGT 530 497 99 Antisense
CAATCGTAATTTGCGTTTTATATGG 363 179 117 Antisense
AAGGGGAAGGAGCGGGCTGCGAACT 8 153 154 Antisense
CTGCGAACTGCCATTGCTGCAAGAC 626 235 170 Antisense
ATTGCTGCAAGACCACGCAGGCGTC 449 5 182 Antisense
Sequence Source Affymetrix Proprietary Database