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[172597_x_at]

Description F36H12.4 /REP_DB=WormBase Gene ID /WP=CE09976 /TR=O76717 /GB=AAC26927.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 6.9
(-2.8)
A 		4.4
(-3)
A 		4.7
(-3)
A 		76.9
(3)
A 		73
B 3.5
(-2.9)
A 		3.6
(-2.8)
A 		2.7
(-3)
A 		35.5
(3)
A 		33
C 2.7
(-2.5)
A 		13.8
(3)
A 		1.6
(-3)
A 		3.3
(-2.2)
A 		12
avr 4.4
(-2.8) 		7.3
(-2.3) 		3
(-3) 		38.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 3.6
(-3)
A 		6.3
(-2.7)
A 		5.2
(-2.8)
A 		6.1
(-2.7)
A 		3.6
(-3)
A 		58.6
(3)
M 		55
B 5.7
(-2.2)
A 		6.3
(-2.1)
A 		1.6
(-3)
A 		3.9
(-2.6)
A 		3
(-2.7)
A 		33.3
(3)
A 		32
C 2.2
(-3)
A 		24
(-0.2)
A 		3.6
(-2.8)
A 		38.9
(1.7)
A 		49.2
(3)
A 		18.1
(-1)
A 		47
avr 3.8
(-2.9) 		12.2
(-1.4) 		3.5
(-3) 		16.3
(-0.7) 		18.6
(-0.3) 		36.7
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.5
(-2.1)
A 		1
(-3)
A 		1.2
(-2.9)
A 		11.3
(3)
A 		10
B 1.1
(-2.6)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		7.6
(3)
A 		7
C 0.9
(-2.3)
A 		4
(3)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		4
avr 1.5
(-2.3) 		2
(-1.7) 		0.8
(-3) 		6.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.2
(-2.3)
A 		1.1
(-2.8)
A 		1.5
(-2.6)
A 		1.1
(-2.8)
A 		14.3
(3)
M 		14
B 2
(-2.2)
A 		2.1
(-2.2)
A 		0.4
(-3)
A 		1
(-2.7)
A 		1.2
(-2.6)
A 		12.4
(3)
A 		12
C 0.8
(-3)
A 		7.3
(-0.4)
A 		0.9
(-3)
A 		7.8
(-0.2)
A 		15.9
(3)
A 		6.1
(-0.9)
A 		15
avr 1.2
(-2.8) 		3.9
(-1.2) 		0.8
(-3) 		3.4
(-1.5) 		6.1
(0.1) 		10.9
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172597_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10544
Sequence Type Exemplar sequence
Representative Public ID F36H12.4 NCBI
Target Description F36H12.4 /REP_DB=WormBase Gene ID /WP=CE09976 /TR=O76717 /GB=AAC26927.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068364 NCBI Caenorhabditis elegans F36H12.4 (F36H12.4) mRNA, complete cds. 11/11 None
SNAP00000002643 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5269134:5269547:1 11/11 None
GENEFINDER00000002651 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5269196:5269547:1 11/11 None
F36H12.4 ENSEMBL cdna:known chromosome:CEL140:IV:5269102:5269565:1 gene:F36H12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002644 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5269201-5269553(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H12.4
Entrez Gene 177306 Entrez gene
SwissProt O76717 EMBL-EBI
WormBase CE31691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26927 Hypothetical protein F36H12.4 [Caenorhabditis elegans] ref|NP_500765.2| F36H12.4 [Caenorhabditis elegans] 2.0E-21
blast AAC26927 Hypothetical protein F36H12.4 [Caenorhabditis elegans] ref|NP_500765.2| F36H12.4 [Caenorhabditis elegans] 6.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500765.2 1 5-24
F36H12.4 1 5-24
SNAP00000002643 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:172597_X_AT
tgccaatgattgcaattttcgtgctacttggatccatagcaaattgcggtggcaagaaga
aaggagcagctggagccggagccggagttgcagccaacagcccaaaaaaggcagatggac
cgtcgaagaaggaaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCAATGATTGCAATTTTCGTGCT 15 587 17 Antisense
GATTGCAATTTTCGTGCTACTTGGA 474 433 24 Antisense
AATTTTCGTGCTACTTGGATCCATA 66 175 30 Antisense
TTCGTGCTACTTGGATCCATAGCAA 279 695 34 Antisense
GGATCCATAGCAAATTGCGGTGGCA 376 513 46 Antisense
GCGGTGGCAAGAAGAAAGGAGCAGC 303 293 62 Antisense
AGAAAGGAGCAGCTGGAGCCGGAGC 276 73 74 Antisense
TGGAGCCGGAGCCGGAGTTGCAGCC 3 549 87 Antisense
GTTGCAGCCAACAGCCCAAAAAAGG 194 439 103 Antisense
AAAAAGGCAGATGGACCGTCGAAGA 410 129 121 Antisense
GATGGACCGTCGAAGAAGGAAACGA 10 405 130 Antisense
Sequence Source Affymetrix Proprietary Database