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[172596_x_at]

Description C29F9.11 /REP_DB=WormBase Gene ID /WP=CE08459 /TR=Q9TZC0 /GB=AAC68752.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      4grp_high_8_8 > 03      6grp_total > 72      4grp_total > 13      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 76.3
(0.6)
P 		59.6
(-1)
A 		38.3
(-3)
A 		102.2
(3)
P 		64
B 85.8
(3)
P 		48.5
(-1.3)
P 		33.6
(-3)
A 		73
(1.5)
P 		52
C 107.8
(-0.1)
P 		48.8
(-3)
A 		67.1
(-2.1)
P 		172.7
(3)
P 		124
avr 90
(0.8) 		52.3
(-2.5) 		46.3
(-3) 		116
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 49.4
(-2.1)
P 		55
(-1.9)
P 		166.8
(3)
P 		85
(-0.6)
P 		125.2
(1.2)
P 		29.1
(-3)
P 		138
B 58.4
(-1.2)
P 		97.9
(2.2)
P 		90.4
(1.5)
P 		107.7
(3)
P 		77.7
(0.4)
P 		38
(-3)
A 		70
C 68.2
(-1.8)
P 		61
(-2.5)
P 		77.4
(-1)
P 		120
(3)
P 		66.8
(-2)
P 		55.7
(-3)
P 		64
avr 58.7
(-1.5) 		71.3
(-0.4) 		111.5
(3) 		104.2
(2.4) 		89.9
(1.2) 		40.9
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 27.8
(3)
P 		12.9
(-2)
A 		10
(-3)
A 		15
(-1.3)
P 		18
B 27.4
(3)
P 		12
(-1.7)
P 		7.8
(-3)
A 		15.6
(-0.6)
P 		20
C 35.7
(3)
P 		14
(-3)
A 		23.4
(-0.4)
P 		29.1
(1.2)
P 		22
avr 30.3
(3) 		13
(-3) 		13.7
(-2.8) 		19.9
(-0.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 9.1
(-2.6)
P 		19.6
(-0.6)
P 		36.3
(2.7)
P 		21.6
(-0.2)
P 		37.8
(3)
P 		7.1
(-3)
P 		31
B 20.3
(-1)
P 		32.6
(3)
P 		22
(-0.5)
P 		28.5
(1.7)
P 		31.5
(2.6)
P 		14.2
(-3)
A 		18
C 25.3
(3)
P 		18.6
(-3)
P 		19.7
(-2)
P 		24.1
(1.9)
P 		21.6
(-0.3)
P 		18.7
(-2.9)
P 		7
avr 18.2
(-1.3) 		23.6
(0.6) 		26
(1.5) 		24.7
(1) 		30.3
(3) 		13.3
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172596_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8184
Sequence Type Exemplar sequence
Representative Public ID C29F9.11 NCBI
Target Description C29F9.11 /REP_DB=WormBase Gene ID /WP=CE08459 /TR=Q9TZC0 /GB=AAC68752.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064742 NCBI Caenorhabditis elegans C29F9.11 (C29F9.11) mRNA, complete cds. 11/11 None
GENEFINDER00000042038 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:95127:110748:-1 11/11 None
C29F9.11 ENSEMBL cdna:known chromosome:CEL140:III:109321:111044:-1 gene:C29F9.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064741 3/11 Cross Hyb Matching Probes A 
NM_064895 3/11 Cross Hyb Matching Probes A 
NM_064898 5/11 Cross Hyb Matching Probes B 
NM_064899 1/11 Cross Hyb Matching Probes A 
SNAP00000007696 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007715 5/11 Cross Hyb Matching Probes None
SNAP00000007700 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007711 1/11 Cross Hyb Matching Probes None
SNAP00000042028 3/11 Cross Hyb Matching Probes None
SNAP00000009968 1/11 Cross Hyb Matching Probes None
C29F9.10 3/11 Cross Hyb Matching Probes A 
T12B5.6 3/11 Cross Hyb Matching Probes A 
T12B5.8 5/11 Cross Hyb Matching Probes B 
T12B5.10 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:109320-110184(-) 89.65 89.65
Public Domain and Genome References
Gene Title
Ensembl C29F9.11
Entrez Gene 183027 Entrez gene
SwissProt Q9TZC0 EMBL-EBI
WormBase CE08459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68752 Hypothetical protein C29F9.11 [Caenorhabditis elegans] ref|NP_497143.1| C29F9.11 [Caenorhabditis elegans] 1.0E-176
blast AAC68752 Hypothetical protein C29F9.11 [Caenorhabditis elegans] ref|NP_497143.1| C29F9.11 [Caenorhabditis elegans] 1.0E-154
blast AAC68749 Hypothetical protein C29F9.8 [Caenorhabditis elegans] ref|NP_497140.1| C29F9.8 [Caenorhabditis elegans] 1.0E-115
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 1.0E-109
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 1.0E-108
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 7.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-57
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-57
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.4E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042038 2 729-751,896-913
Sequence
Target Sequence 
>C. ELEGANS:172596_X_AT
gatgcgacattgttacaactttcattaagattttcaaagccgaaaaatgtattcatgtaa
aagaaatagaactttggtttttcggttttgatgaagtccttacgattctttcatggtttg
atgctaaagagctcaaaactattaaattaatatgtatggagtcaatgaagtcaatagacc
gttttgaacgtataacccaattggagcaatggaaaaatgcagaagtagttaaaattgatg
gttctaagattgccagtacaatgattgttcatttttttcatttcaaatgtttcactgttg
actacactgacgaatttccagcacaggctgcaatacaaatgagagatgatcttttaagaa
gaagtacattccaaagttgcgatttaaaattggcaaattcaaagtcaaatccgattgaaa
ttgcaaaagtattcaaaccggactacactggtggaaacgtatttaagattgaatttccaa
atggtaacgacacattcgatatttcgctttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCGACATTGTTACAACTTTCAT 496 413 374 Antisense
TTTCGGTTTTGATGAAGTCCTTACG 151 653 453 Antisense
AGTCCTTACGATTCTTTCATGGTTT 302 61 468 Antisense
GATTGTTCATTTTTTTCATTTCAAA 383 435 636 Antisense
AATGTTTCACTGTTGACTACACTGA 22 163 659 Antisense
CTGTTGACTACACTGACGAATTTCC 117 239 668 Antisense
CTGACGAATTTCCAGCACAGGCTGC 529 237 680 Antisense
GAAGTACATTCCAAAGTTGCGATTT 271 335 734 Antisense
TTCAAACCGGACTACACTGGTGGAA 648 685 805 Antisense
GAATTTCCAAATGGTAACGACACAT 437 323 844 Antisense
GACACATTCGATATTTCGCTTTGGA 192 367 862 Antisense
Sequence Source Affymetrix Proprietary Database