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[172593_x_at] --- /// --- /// ---

Description F45D11.3 /REP_DB=WormBase Gene ID /WP=CE23737 /TR=Q9N2L5 /GB=AAF39817.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_high_8_8 > 45      6grp_highest_nonorm > 43      6grp_total > 20      4grp_total > 50      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 538
1 2 3 4 range
A 226.3
(-1.8)
P 		602.2
(3)
P 		529.4
(2.1)
P 		135.7
(-3)
A 		467
B 214.7
(-1.7)
P 		631.7
(3)
P 		429.1
(0.7)
P 		97.6
(-3)
M 		534
C 248.7
(-2.3)
P 		635.1
(3)
P 		541
(1.7)
P 		195.7
(-3)
P 		439
avr 229.9
(-1.9) 		623
(3) 		499.8
(1.5) 		143
(-3) 		480

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1987
1 2 3 4 5 6 range
A 285.1
(-2.9)
P 		2213.3
(3)
P 		1469.8
(0.7)
P 		1143
(-0.3)
P 		605.4
(-1.9)
P 		244.3
(-3)
P 		1969
B 258.8
(-2.9)
P 		1830.6
(3)
P 		1553.5
(2)
P 		954.5
(-0.3)
P 		646.2
(-1.5)
P 		242.5
(-3)
P 		1588
C 256.9
(-2.9)
P 		1773.1
(2.5)
P 		1913.5
(3)
P 		831.1
(-0.8)
P 		514.1
(-2)
P 		226
(-3)
P 		1688
avr 266.9
(-2.9) 		1939
(3) 		1645.6
(2) 		976.2
(-0.4) 		588.6
(-1.8) 		237.6
(-3) 		1701
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 82.4
(0.2)
P 		130.7
(2.6)
P 		138.4
(3)
P 		19.9
(-3)
A 		119
B 68.5
(-0.9)
P 		156
(3)
P 		99.4
(0.5)
P 		20.8
(-3)
M 		135
C 82.3
(-1.1)
P 		182.6
(2.8)
P 		188.5
(3)
P 		33
(-3)
P 		156
avr 77.7
(-0.6) 		156.4
(3) 		142.1
(2.3) 		24.6
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 735
1 2 3 4 5 6 range
A 52.6
(-3)
P 		787.2
(3)
P 		320.1
(-0.8)
P 		289.9
(-1.1)
P 		182.7
(-1.9)
P 		59.5
(-2.9)
P 		735
B 90
(-3)
P 		609.3
(3)
P 		377.2
(0.3)
P 		252.8
(-1.1)
P 		262.5
(-1)
P 		90.4
(-3)
P 		519
C 95.2
(-2.7)
P 		541
(3)
P 		487
(2.3)
P 		167.1
(-1.8)
P 		166.4
(-1.8)
P 		75.6
(-3)
P 		465
avr 79.3
(-3) 		645.8
(3) 		394.8
(0.4) 		236.6
(-1.3) 		203.9
(-1.6) 		75.2
(-3) 		571
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172593_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4361
Sequence Type Exemplar sequence
Representative Public ID F45D11.3 NCBI
Target Description F45D11.3 /REP_DB=WormBase Gene ID /WP=CE23737 /TR=Q9N2L5 /GB=AAF39817.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061487(11), NM_061485(11), NM_061483(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061487 NCBI Caenorhabditis elegans F45D11.2 (F45D11.2) mRNA, complete cds. 11/11 A 
NM_061485 NCBI Caenorhabditis elegans F45D11.3 (F45D11.3) mRNA, complete cds. 11/11 A 
NM_061483 NCBI Caenorhabditis elegans F45D11.4 (F45D11.4) mRNA, complete cds. 9/11 A 
SNAP00000019559 ENSEMBL cdna:SNAP chromosome:CEL140:II:1008238:1009163:1 11/11 None
SNAP00000019562 ENSEMBL cdna:SNAP chromosome:CEL140:II:1014066:1014991:1 11/11 None
SNAP00000019565 ENSEMBL cdna:SNAP chromosome:CEL140:II:1019884:1020809:1 11/11 None
GENEFINDER00000019571 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1007798:1009163:1 10/11 None
GENEFINDER00000019576 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1019444:1021280:1 10/11 None
GENEFINDER00000019579 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1013626:1014991:1 10/11 None
F45D11.4 ENSEMBL cdna:known chromosome:CEL140:II:1007798:1009042:1 gene:F45D11.4 9/11 A 
F45D11.3 ENSEMBL cdna:known chromosome:CEL140:II:1013626:1014991:1 gene:F45D11.3 11/11 A 
F45D11.2 ENSEMBL cdna:known chromosome:CEL140:II:1019444:1020809:1 gene:F45D11.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061488 1/11 Cross Hyb Matching Probes None
NM_061482 1/11 Cross Hyb Matching Probes A 
NM_061484 1/11 Cross Hyb Matching Probes A 
NM_061486 1/11 Cross Hyb Matching Probes A 
NM_061500 1/11 Cross Hyb Matching Probes None
SNAP00000019556 2/11 Cross Hyb Matching Probes None
SNAP00000019557 1/11 Cross Hyb Matching Probes None
SNAP00000019560 1/11 Cross Hyb Matching Probes None
SNAP00000019563 1/11 Cross Hyb Matching Probes None
SNAP00000019567 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019570 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019572 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019575 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019577 1/11 Cross Hyb Matching Probes None
SNAP00000023023 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023034 1/11 Cross Hyb Matching Probes None
F45D11.14 1/11 Cross Hyb Matching Probes A 
F45D11.15 1/11 Cross Hyb Matching Probes A 
F45D11.16 1/11 Cross Hyb Matching Probes A 
F45D11.1.2 1/11 Cross Hyb Matching Probes None
F45D11.1.1 1/11 Cross Hyb Matching Probes None
K02E7.6.1 1/11 Cross Hyb Matching Probes None
K02E7.6.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1007796-1009162(+) 100.0 100.0
chrII:1013624-1014990(+) 100.0 100.0
chrII:1019442-1020808(+) 100.0 100.0
Public Domain and Genome References
Gene Title


Ensembl F45D11.4
F45D11.3
F45D11.2
Entrez Gene 185780 Entrez gene
185781 Entrez gene
185782 Entrez gene
SwissProt Q9N2L5 EMBL-EBI
Q9N5T1 EMBL-EBI
WormBase CE23737 Wormbase
CE23737 Wormbase
CE23738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39817 Hypothetical protein F45D11.3 [Caenorhabditis elegans] gb|AAF39816.1| Hypothetical protein F45D11.2 [Caenorhabditis elegans] ref|NP_493886.1| F45D11.3 [Caenorhabditis elegans] ref|NP_493888.1| F45D11.2 [Caenorhabditis elegans] 0.0
blast AAF39818 Hypothetical protein F45D11.4 [Caenorhabditis elegans] ref|NP_493884.1| F45D11.4 [Caenorhabditis elegans] 0.0
blast AAF39817 Hypothetical protein F45D11.3 [Caenorhabditis elegans] gb|AAF39816.1| Hypothetical protein F45D11.2 [Caenorhabditis elegans] ref|NP_493886.1| F45D11.3 [Caenorhabditis elegans] ref|NP_493888.1| F45D11.2 [Caenorhabditis elegans] 1.0E-180
blast AAF39818 Hypothetical protein F45D11.4 [Caenorhabditis elegans] ref|NP_493884.1| F45D11.4 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 9.8E-9
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.2E-117
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 9.7E-7
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 4.8E-7
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 3.0E-6
Sequence
Target Sequence 
>C. ELEGANS:172593_X_AT
gtgacgaaccctctcaaagtgattatggagggagaggagcttccttcaaaagcaacattc
gaaaagtggaaagacgtgctcaatagcacactttcacaattcttgatgttggaatgcttc
gctacgggacttcttcatccagaagacaatagtgacagtaagaaaatcatggaaaagttg
acttactacgatactctattcaaacaatgggagaatctttatttgaacgacataccatac
tggccgaaactcaaaaagtacgttgagagaattcaaggagaaggatcgtttgacagggac
gaagacatggccactgagctcttaaaaggattcgagaccattttcacaaatgacaacttc
tatatgtttgtgttcgccagagacattcactacgagattcacgttgtaaaacccgaaatg
gtgttcatctcgaagaatatcggaaagttcgacgtcatcgtttctcgtgcatttgagcac
aacacgaaaacatgtgatgaatatcagaagaaaatgaagaatgacatccgtggagagatt
caaatatacaaacctcgctggtgctcgctggaagatttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACGAACCCTCTCAAAGTGATTA 647 471 331 Antisense
GCTCAATAGCACACTTTCACAATTC 58 303 408 Antisense
GATGTTGGAATGCTTCGCTACGGGA 582 397 435 Antisense
GCTACGGGACTTCTTCATCCAGAAG 331 301 451 Antisense
GTTGACTTACTACGATACTCTATTC 11 439 507 Antisense
GAACGACATACCATACTGGCCGAAA 384 347 555 Antisense
GGACGAAGACATGGCCACTGAGCTC 494 523 627 Antisense
GTGTTCGCCAGAGACATTCACTACG 615 485 700 Antisense
AAAGTTCGACGTCATCGTTTCTCGT 666 21 774 Antisense
AATATACAAACCTCGCTGGTGCTCG 209 173 873 Antisense
GCTGGTGCTCGCTGGAAGATTTGTT 291 295 887 Antisense
Sequence Source Affymetrix Proprietary Database