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[172591_x_at]

Description C29F9.12 /REP_DB=WormBase Gene ID /WP=CE08460 /TR=Q9TZB6 /GB=AAC68753.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 21      6grp_total > 96      4grp_total > 18      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 80.6
(-1.5)
P 		94.8
(-0.5)
P 		60.4
(-3)
P 		143.7
(3)
P 		83
B 57.6
(-3)
P 		95.4
(2.8)
P 		87.2
(1.6)
P 		96.6
(3)
P 		39
C 65.8
(-2.3)
P 		79.5
(-1.6)
A 		49.8
(-3)
P 		179
(3)
P 		129
avr 68
(-2.8) 		89.9
(-1) 		65.8
(-3) 		139.8
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 100.1
(-1.7)
P 		64.6
(-3)
A 		146.6
(0)
P 		137.9
(-0.3)
P 		227.1
(3)
P 		173.7
(1)
P 		163
B 68.1
(-2.4)
P 		53.3
(-3)
P 		52.2
(-3)
P 		117.6
(-0.5)
P 		211.7
(3)
P 		196.7
(2.4)
P 		160
C 54.6
(-2.8)
P 		107.1
(-0.8)
P 		49.3
(-3)
P 		111.6
(-0.6)
P 		93.5
(-1.3)
P 		206.1
(3)
P 		157
avr 74.3
(-3) 		75
(-3) 		82.7
(-2.6) 		122.4
(-0.6) 		177.4
(2.2) 		192.2
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 29.3
(3)
P 		20.6
(-0.9)
P 		15.8
(-3)
P 		21
(-0.7)
P 		14
B 18.4
(-3)
P 		23.6
(3)
P 		20.2
(-0.9)
P 		20.6
(-0.5)
P 		5
C 21.8
(-0.9)
P 		22.9
(-0.4)
A 		17.4
(-3)
P 		30.2
(3)
P 		13
avr 23.2
(2.3) 		22.4
(1.5) 		17.8
(-3) 		23.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 18.5
(-3)
P 		23
(-2.5)
A 		31.9
(-1.4)
P 		35
(-1)
P 		68.5
(3)
P 		42.3
(-0.1)
P 		50
B 23.7
(-2.1)
P 		17.7
(-2.6)
P 		12.7
(-3)
P 		31.2
(-1.5)
P 		86
(3)
P 		73.4
(2)
P 		73
C 20.2
(-2.2)
P 		32.7
(-0.9)
P 		12.5
(-3)
P 		22.4
(-1.9)
P 		30.3
(-1.1)
P 		69
(3)
P 		57
avr 20.8
(-2.7) 		24.5
(-2.2) 		19
(-3) 		29.5
(-1.5) 		61.6
(3) 		61.6
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172591_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8270
Sequence Type Exemplar sequence
Representative Public ID C29F9.12 NCBI
Target Description C29F9.12 /REP_DB=WormBase Gene ID /WP=CE08460 /TR=Q9TZB6 /GB=AAC68753.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064746(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064746 NCBI Caenorhabditis elegans C29F9.12 (C29F9.12) mRNA, complete cds. 11/11 None
GENEFINDER00000042041 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:121734:122019:-1 11/11 None
C29F9.12 ENSEMBL cdna:known chromosome:CEL140:III:121734:122019:-1 gene:C29F9.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075836 3/11 Cross Hyb Matching Probes A 
NM_001028150 1/11 Cross Hyb Matching Probes None
NM_001028287 1/11 Cross Hyb Matching Probes None
SNAP00000011900 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011911 1/11 Cross Hyb Matching Probes None
SNAP00000015386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015389 1/11 Cross Hyb Matching Probes None
F01D5.4 4/11 Cross Hyb Matching Probes None
Y38H8A.7 1/11 Cross Hyb Matching Probes None
C52B11.4 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11468378-11468664(+) 96.83 96.83
chrX:1285203-1285489(+) 96.83 96.83
chrI:5142857-5143143(+) 96.83 96.83
chrIII:121733-122019(-) 100.0 100.0
chrII:6938509-6938794(-) 95.77 95.77
chrII:14000638-14000924(-) 94.71 94.71
Public Domain and Genome References
Gene Title
Ensembl C29F9.12
Entrez Gene 183028 Entrez gene
SwissProt Q9TZB6 EMBL-EBI
WormBase CE08460 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68753 Hypothetical protein C29F9.12 [Caenorhabditis elegans] ref|NP_497147.1| C29F9.12 [Caenorhabditis elegans] 3.0E-30
Sequence
Target Sequence 
>C. ELEGANS:172591_X_AT
accgaaaactacaattcctccagagctccttcacaccatcagtgtcagctcgaagttatt
gagtgccgattttggagacgttttctcccgacaggtggatcaaaaattttcgaacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGAAAACTACAATTCCTCCAGAG 495 89 46 Antisense
AAACTACAATTCCTCCAGAGCTCCT 631 127 51 Antisense
CTCCTTCACACCATCAGTGTCAGCT 631 235 71 Antisense
ACACCATCAGTGTCAGCTCGAAGTT 406 109 78 Antisense
CATCAGTGTCAGCTCGAAGTTATTG 531 213 82 Antisense
GAAGTTATTGAGTGCCGATTTTGGA 5 335 97 Antisense
GAGTGCCGATTTTGGAGACGTTTTC 637 399 106 Antisense
TTGGAGACGTTTTCTCCCGACAGGT 261 701 117 Antisense
CGTTTTCTCCCGACAGGTGGATCAA 202 245 124 Antisense
TTTTCTCCCGACAGGTGGATCAAAA 585 675 126 Antisense
GGTGGATCAAAAATTTTCGAACGCA 496 499 139 Antisense
Sequence Source Affymetrix Proprietary Database