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[172590_x_at]

Description C17H11.4 /REP_DB=WormBase Gene ID /WP=CE08292 /TR=P91065 /GB=AAB37985.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.5
(-3)
A 		6
(3)
A 		4.7
(1.3)
A 		3.6
(-0.2)
A 		5
B 1.2
(-3)
A 		4.4
(1.4)
A 		3.5
(0.1)
A 		5.6
(3)
A 		4
C 5.5
(3)
A 		4.1
(1.1)
A 		1
(-3)
A 		2.8
(-0.6)
A 		5
avr 2.7
(-3) 		4.8
(3) 		3.1
(-1.9) 		4
(0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.1
(0.1)
A 		2.4
(-3)
A 		2.5
(-2.8)
A 		4.3
(0.5)
A 		5.7
(3)
A 		5.2
(2.1)
A 		3
B 3
(-3)
A 		4.2
(-2.1)
A 		3.3
(-2.8)
A 		11.2
(3)
A 		10.5
(2.5)
A 		7.2
(0.1)
A 		8
C 1.7
(-1.5)
A 		1.6
(-1.8)
A 		2.4
(0.6)
A 		3.2
(3)
A 		1.2
(-3)
A 		2.5
(0.9)
A 		2
avr 2.9
(-2.7) 		2.7
(-3) 		2.7
(-3) 		6.2
(3) 		5.8
(2.3) 		5
(0.9) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(-2.3)
A 		1.3
(3)
A 		1.2
(2.3)
A 		0.5
(-3)
A 		1
B 0.4
(-3)
A 		1.1
(2.3)
A 		0.8
(0)
A 		1.2
(3)
A 		1
C 1.8
(3)
A 		1.2
(0.4)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		1
avr 0.9
(-0.6) 		1.2
(3) 		0.8
(-1.8) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.8
(-1.9)
A 		0.8
(-1.9)
A 		0.6
(-3)
A 		1.1
(-0.3)
A 		1.7
(3)
A 		1.3
(0.8)
A 		1
B 1
(-2.7)
A 		1.4
(-2)
A 		0.8
(-3)
A 		3
(0.8)
A 		4.3
(3)
A 		2.7
(0.3)
A 		4
C 0.6
(-0)
A 		0.5
(-1.5)
A 		0.6
(-0)
A 		0.6
(-0)
A 		0.4
(-3)
A 		0.8
(3)
A 		0
avr 0.8
(-2.6) 		0.9
(-2.1) 		0.7
(-3) 		1.6
(0.9) 		2.1
(3) 		1.6
(0.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172590_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16337
Sequence Type Exemplar sequence
Representative Public ID C17H11.4 NCBI
Target Description C17H11.4 /REP_DB=WormBase Gene ID /WP=CE08292 /TR=P91065 /GB=AAB37985.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076979 NCBI Caenorhabditis elegans C17H11.4 (C17H11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000009231 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8180970:8181579:-1 11/11 None
C17H11.4 ENSEMBL cdna:known chromosome:CEL140:X:8180970:8181579:-1 gene:C17H11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070468 1/11 Cross Hyb Matching Probes A 
SNAP00000030839 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030905 1/11 Cross Hyb Matching Probes None
SNAP00000009210 8/11 Cross Hyb Matching Probes None
Y73F8A.34.1 1/11 Cross Hyb Matching Probes None
Y73F8A.34.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8180968-8181578(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H11.4
Entrez Gene 182752 Entrez gene
SwissProt P91065 EMBL-EBI
WormBase CE08292 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37985 Hypothetical protein C17H11.4 [Caenorhabditis elegans] ref|NP_509380.1| C17H11.4 [Caenorhabditis elegans] 1.0E-59
blast AAB37985 Hypothetical protein C17H11.4 [Caenorhabditis elegans] ref|NP_509380.1| C17H11.4 [Caenorhabditis elegans] 1.0E-55
blast CAB70234 Hypothetical protein Y73F8A.34 [Caenorhabditis elegans] ref|NP_502869.1| Y73F8A.34 [Caenorhabditis elegans] 6.0E-41
blast CAB70234 Hypothetical protein Y73F8A.34 [Caenorhabditis elegans] ref|NP_502869.1| Y73F8A.34 [Caenorhabditis elegans] 7.0E-37
blast AAB93643 Hypothetical protein C27A12.6 [Caenorhabditis elegans] ref|NP_491747.1| C27A12.6 [Caenorhabditis elegans] 4.0E-29
blast AAB93643 Hypothetical protein C27A12.6 [Caenorhabditis elegans] ref|NP_491747.1| C27A12.6 [Caenorhabditis elegans] 4.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172590_X_AT
ttcaattccttcgacaaccggtcgatgcgctatccgagtgccgacgcacgctcaagtatg
cctacgccttcgcctactacctggaggcgaacaatttgacgacactgttcgagacgaatc
aaagtgatctcgaattggcgaccgagcagctctccgggatgttggaaggcgatttggagg
atatggatttggccgaactgaagcggaaggtccaagacaagtaccgctacgtgaagctcc
gccggaaaaaaagttctgcgaatcgcgtatcaatttttcttcagcacaaacttttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAATTCCTTCGACAACCGGTCGA 177 683 29 Antisense
TCGACAACCGGTCGATGCGCTATCC 519 601 39 Antisense
GGAGGCGAACAATTTGACGACACTG 554 515 111 Antisense
GATCTCGAATTGGCGACCGAGCAGC 684 417 154 Antisense
GCAGCTCTCCGGGATGTTGGAAGGC 62 315 174 Antisense
GGAGGATATGGATTTGGCCGAACTG 28 515 204 Antisense
GACAAGTACCGCTACGTGAAGCTCC 509 363 244 Antisense
GCTCCGCCGGAAAAAAAGTTCTGCG 690 295 264 Antisense
AAGTTCTGCGAATCGCGTATCAATT 591 155 279 Antisense
GCGTATCAATTTTTCTTCAGCACAA 707 291 293 Antisense
ATTTTTCTTCAGCACAAACTTTTGT 411 15 301 Antisense
Sequence Source Affymetrix Proprietary Database