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[172588_x_at]

Description C26F1.10 /REP_DB=WormBase Gene ID /WP=CE06884 /TR=Q18234 /GB=AAB37072.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 75      6grp_total > 46      4grp_total > 04      6grp_cgc > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2748
1 2 3 4 range
A 1366.4
(-0.9)
P 		552.2
(-2.7)
P 		441.1
(-3)
P 		3040.2
(3)
P 		2599
B 1431.1
(-0.8)
P 		801
(-2.2)
P 		427.3
(-3)
P 		3175.4
(3)
P 		2748
C 1367.7
(-0.7)
P 		783.3
(-2.2)
P 		466.5
(-3)
P 		2791.8
(3)
P 		2325
avr 1388.4
(-0.8) 		712.2
(-2.4) 		445
(-3) 		3002.5
(3) 		2558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 867.6
(1)
P 		948.4
(3)
P 		793.4
(-0.9)
P 		714.4
(-2.8)
P 		707.8
(-3)
P 		757.9
(-1.8)
P 		241
B 922
(-0.3)
P 		1157.2
(3)
P 		976
(0.4)
P 		901.2
(-0.6)
P 		733.8
(-3)
P 		1006.3
(0.9)
P 		423
C 770.8
(-1.3)
P 		1065.5
(1.9)
P 		681.1
(-2.3)
P 		900.9
(0.1)
P 		613.1
(-3)
P 		1170.8
(3)
P 		558
avr 853.5
(-0.3) 		1057
(3) 		816.8
(-0.9) 		838.8
(-0.5) 		684.9
(-3) 		978.3
(1.7) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 497.5
(3)
P 		119.9
(-2.9)
P 		115.3
(-3)
P 		445
(2.2)
P 		382
B 456.4
(0.7)
P 		197.8
(-2)
P 		99
(-3)
P 		676.7
(3)
P 		578
C 452.8
(2.7)
P 		225.2
(-1.8)
P 		162.6
(-3)
P 		470.7
(3)
P 		308
avr 468.9
(2.1) 		181
(-2.2) 		125.6
(-3) 		530.8
(3) 		405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 159.9
(-3)
P 		337.3
(3)
P 		172.8
(-2.6)
P 		181.2
(-2.3)
P 		213.6
(-1.2)
P 		184.5
(-2.2)
P 		177
B 320.8
(0.4)
P 		385.2
(3)
P 		237
(-3)
P 		238.7
(-2.9)
P 		298.1
(-0.5)
P 		375.3
(2.6)
P 		148
C 285.7
(0.1)
P 		325.1
(1.2)
P 		173.4
(-3)
P 		181.2
(-2.8)
P 		198.4
(-2.3)
P 		391.9
(3)
P 		219
avr 255.5
(-0.6) 		349.2
(3) 		194.4
(-3) 		200.4
(-2.8) 		236.7
(-1.4) 		317.2
(1.8) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172588_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11703
Sequence Type Exemplar sequence
Representative Public ID C26F1.10 NCBI
Target Description C26F1.10 /REP_DB=WormBase Gene ID /WP=CE06884 /TR=Q18234 /GB=AAB37072.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072610 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-21) (flp-21) mRNA, complete cds. 11/11 None
C26F1.10.1 ENSEMBL cdna:known chromosome:CEL140:V:7795957:7796604:1 gene:C26F1.10 11/11 None
C26F1.10.2 ENSEMBL cdna:known chromosome:CEL140:V:7795959:7796613:1 gene:C26F1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7795962-7796171(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-21
Ensembl C26F1.10
Entrez Gene 182944 Entrez gene
SwissProt Q18234 EMBL-EBI
WormBase CE30733 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37072 Fmrf-like peptide protein 21 [Caenorhabditis elegans] ref|NP_505011.2| FMRF-Like Peptide family member (flp-21) [Caenorhabditis elegans] 4.0E-32
blast CAE73192 Hypothetical protein CBG20591 [Caenorhabditis briggsae] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:172588_X_AT
ctcgcagcgccttatatcgatcaggaagatgcgctccgcgttttgaacgcatatttggag
caattcggacccggcagtgacagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGCAGCGCCTTATATCGATCAGG 44 233 55 Antisense
CGCAGCGCCTTATATCGATCAGGAA 695 253 57 Antisense
AGCGCCTTATATCGATCAGGAAGAT 130 83 60 Antisense
TCAGGAAGATGCGCTCCGCGTTTTG 489 623 75 Antisense
ATGCGCTCCGCGTTTTGAACGCATA 414 41 83 Antisense
GCGCTCCGCGTTTTGAACGCATATT 350 287 85 Antisense
GCTCCGCGTTTTGAACGCATATTTG 33 299 87 Antisense
TGAACGCATATTTGGAGCAATTCGG 330 573 98 Antisense
ATATTTGGAGCAATTCGGACCCGGC 275 17 105 Antisense
GCAATTCGGACCCGGCAGTGACAGA 444 321 114 Antisense
CAATTCGGACCCGGCAGTGACAGAG 280 179 115 Antisense
Sequence Source Affymetrix Proprietary Database