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[172587_x_at]

Description C03A7.14 /REP_DB=WormBase Gene ID /WP=CE07872 /TR=O16511 /GB=AAB66007.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 58      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8672
1 2 3 4 range
A 106.9
(-3)
A 		8733.3
(3)
P 		6659.6
(1.6)
P 		112.3
(-3)
A 		8626
B 68.7
(-3)
A 		7073.4
(3)
P 		7021.3
(3)
P 		92.8
(-3)
P 		7005
C 61.1
(-3)
A 		6880.2
(3)
P 		6232.9
(2.4)
P 		73.2
(-3)
A 		6819
avr 78.9
(-3) 		7562.3
(3) 		6637.9
(2.3) 		92.8
(-3) 		7483

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2273
1 2 3 4 5 6 range
A 2281.3
(-1.7)
P 		4062.2
(3)
P 		1789.5
(-3)
P 		2101.9
(-2.2)
P 		3539.3
(1.6)
P 		3256.7
(0.9)
P 		2273
B 2019.6
(-3)
P 		3307.8
(3)
P 		2170.8
(-2.3)
P 		2481
(-0.9)
P 		2753.8
(0.4)
P 		2642.3
(-0.1)
P 		1288
C 2098.9
(-2.5)
P 		3205.5
(1.2)
P 		2092.4
(-2.5)
P 		1941
(-3)
P 		3728
(3)
P 		2449.9
(-1.3)
P 		1787
avr 2133.3
(-2.5) 		3525.2
(3) 		2017.6
(-3) 		2174.6
(-2.4) 		3340.4
(2.3) 		2783
(0) 		1508
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2160
1 2 3 4 range
A 38.9
(-2.9)
A 		1895.8
(3)
P 		1740.9
(2.5)
P 		16.4
(-3)
A 		1879
B 21.9
(-3)
A 		1747
(3)
P 		1627
(2.6)
P 		19.8
(-3)
P 		1727
C 20.2
(-3)
A 		1978.1
(2.5)
P 		2172.4
(3)
P 		12.3
(-3)
A 		2160
avr 27
(-3) 		1873.6
(3) 		1846.8
(2.9) 		16.2
(-3) 		1857

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1055
1 2 3 4 5 6 range
A 420.5
(-2.8)
P 		1444.7
(3)
P 		389.7
(-3)
P 		533.1
(-2.2)
P 		1068
(0.9)
P 		792.9
(-0.7)
P 		1055
B 702.7
(-1.2)
P 		1101
(2.8)
P 		527.1
(-3)
P 		657.1
(-1.7)
P 		1118.8
(3)
P 		985.3
(1.6)
P 		592
C 778
(-0.1)
P 		978.1
(1.3)
P 		532.5
(-2)
P 		390.3
(-3)
P 		1206.3
(3)
P 		820.1
(0.2)
P 		816
avr 633.7
(-1.7) 		1174.6
(3) 		483.1
(-3) 		526.8
(-2.6) 		1131
(2.6) 		866.1
(0.3) 		692
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172587_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15073
Sequence Type Exemplar sequence
Representative Public ID C03A7.14 NCBI
Target Description C03A7.14 /REP_DB=WormBase Gene ID /WP=CE07872 /TR=O16511 /GB=AAB66007.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071992 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-8) (abu-8) mRNA, complete cds. 11/11 A 
SNAP00000035293 ENSEMBL cdna:SNAP chromosome:CEL140:V:5192951:5194379:-1 11/11 None
GENEFINDER00000035294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5192951:5194379:-1 11/11 None
C03A7.14 ENSEMBL cdna:known chromosome:CEL140:V:5192828:5194420:-1 gene:C03A7.14 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071982 6/11 Cross Hyb Matching Probes A 
NM_071981 2/11 Cross Hyb Matching Probes A 
NM_071983 8/11 Cross Hyb Matching Probes A 
SNAP00000035278 2/11 Cross Hyb Matching Probes None
SNAP00000035279 6/11 Cross Hyb Matching Probes None
SNAP00000035280 8/11 Cross Hyb Matching Probes None
GENEFINDER00000035296 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035297 8/11 Cross Hyb Matching Probes None
GENEFINDER00000035298 2/11 Cross Hyb Matching Probes None
C03A7.4 2/11 Cross Hyb Matching Probes A 
C03A7.7 6/11 Cross Hyb Matching Probes A 
C03A7.8 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5192950-5194379(-) 97.61 100.0
chrV:5163207-5164532(-) 92.9 92.9
Public Domain and Genome References
Gene Title
Gene Symbol abu-8
Ensembl C03A7.14
Entrez Gene 178904 Entrez gene
SwissProt O16511 EMBL-EBI
WormBase CE07872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66007 Activated in blocked unfolded protein response protein 8 [Caenorhabditis elegans] ref|NP_504393.1| Activated in Blocked Unfolded protein response family member (abu-8) [Caenorhabditis elegans] 5.0E-49
blast AAB65995 Activated in blocked unfolded protein response protein 7 [Caenorhabditis elegans] ref|NP_504384.1| Activated in Blocked Unfolded protein response family member (abu-7) [Caenorhabditis elegans] 1.0E-46
blast CAE64085 Hypothetical protein CBG08690 [Caenorhabditis briggsae] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 3.1E-33
Sequence
Target Sequence 
>C. ELEGANS:172587_X_AT
aaccaaggatctgctaactgcgctccagcctgccagccagcttgtgacaactcttgcaca
tcccaacaggcccagccagtgtaccaacaagcccagccaacttaccaagtccagcaaacc
actgccgctccaatgtacgatccatacaacaaccaaggatctgccaactgcgctccagct
tgccaaccagcttgtgacaactcctgcacttcccagcagactcaaccaatgtaccaacca
tacgacacaaccactgaggctccagctcaagtcatccagattgttctccagacttctgtt
gctcaatcatcccaatgtgctccacaatgcgaacagtcctgccaacagcaatgtgttcag
caacaacagccagctgctcagtgccaaactgcctgccaatcatcatgctctaactcctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAAGGATCTGCTAACTGCGCTC 221 149 817 Antisense
CCAGCCAGCTTGTGACAACTCTTGC 568 273 849 Antisense
ACAACCAAGGATCTGCCAACTGCGC 574 111 965 Antisense
GCTTGCCAACCAGCTTGTGACAACT 683 305 994 Antisense
TTCCCAGCAGACTCAACCAATGTAC 17 699 1026 Antisense
TCATCCAGATTGTTCTCCAGACTTC 701 621 1088 Antisense
TCCAGACTTCTGTTGCTCAATCATC 42 591 1103 Antisense
ATCATCCCAATGTGCTCCACAATGC 637 29 1122 Antisense
TCCACAATGCGAACAGTCCTGCCAA 149 589 1137 Antisense
GCAACAACAGCCAGCTGCTCAGTGC 221 319 1176 Antisense
CCAATCATCATGCTCTAACTCCTGC 490 277 1212 Antisense
Sequence Source Affymetrix Proprietary Database